Query= MSMg01no289_i02.b1 MSMg01no289_i02.b1 CHROMAT_FILE:
MSMg01no289_i02.b1 PHD_FILE: MSMg01no289_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:50 2005
(683 letters)
>mm_chr4_69469283_69470365
Length = 1083
Score = 1007 bits (521), Expect = 0.0
Identities = 634/679 (93%), Gaps = 17/679 (2%)
Strand = Plus / Plus
Query: 7 attcccctacactgggtcattgaacacacttgggcccaagggctgctactcccattgatg 66
||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct: 220 attcccctacactgggtcattgaacacccttgggcccaagggccgctcctcccattgatg 279
Query: 67 tgcagcaaggccatactctgtcacatatgcagctggagccatgggtccctccatgtgtat 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 280 tgcagcaaggccatactctgtcacatatgcagctggagccatgggtccctccatatgtat 339
Query: 127 tctttggtcag-tagtacagtccccaggagctccgggaggtctgacctactgacactgtt 185
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctttggtc-gttggtacagtccccaggagctccgggaggtctgacctactgacactgtt 398
Query: 186 gcaaacctgtgtgatctcctccatggggttgcaaaccccctcagctccttcagtccctaa 245
|| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 399 gc------------tc-cctccatgtggttgcaaaccccctcagctccttcagtccctaa 445
Query: 246 tccaactcttccatctgggacccctcactcagtcaatggttgggtgtgagcatctgcctc 305
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 446 tccaactcttccatctgggacccctcactcagtcaatggttggctgtgagcatctgcctc 505
Query: 306 ggtatttgtcaggttctggcagagcctctcaggagacagccatatcaggcttccatcagc 365
|||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 506 tgtatttgtgaggctctggcagagcctctcaggagacagccatatcaagcttctgtcagc 565
Query: 366 aagcacataacttcttggtcactaccttatctcctctaatcctacactcaagcatcactg 425
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 566 aagcacataacttcttggtcactagcttacctcctctaatcctacactcaagcatcactg 625
Query: 426 tgaatcagcagacagcctgaaagcctgtctgcctacccacccataacctgccaagctttc 485
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 626 tgaatcagcagacagcctgaaagcctgtctgcctacccacccattacctgccaagctttc 685
Query: 486 ccaa-tccaaacctgtgtatttctctgcttcccttatggctgatagagtataaaccatct 544
|||| || |||||||| ||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 686 ccaactc-aaacctgtacatttctctgtttcccttatggctgatagagtattgaccatct 744
Query: 545 ttcttccttccccatgttgtcttcctgagaacaaaatctttatttcacagttttgttctc 604
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 745 ttcttccttccccatgttgtcttcctgagaacaaaatctttatttcattgctttgttctc 804
Query: 605 acaggctagcccagtgttcttggtctcatgctaccagttttctaccagcaatacctggat 664
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 805 acaggctagcccagagttcttggtctcatgctactagttttctaccagcaatacctggat 864
Query: 665 atgacatcattccccatac 683
||||||||||||| ||||
Sbjct: 865 gtgacatcattcccaatac 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_i02.g1 MSMg01no289_i02.g1 CHROMAT_FILE:
MSMg01no289_i02.g1 PHD_FILE: MSMg01no289_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:50 2005
(369 letters)
>mm_chr4_69645936_69646701
Length = 766
Score = 613 bits (317), Expect = e-180
Identities = 355/369 (96%), Gaps = 3/369 (0%)
Strand = Plus / Minus
Query: 1 gacataagtctttgggaggtggggtggcatctcccaactccaaagatcaatccctagaag 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gacatgagtctttgggaggtggggtggcatctcccaactccaaagatcaatccctagaag 687
Query: 61 gaagaaaacagtgctgggagcatcattactacttctggtagctacaactgacaagaaatg 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaagaaaacagtgttgggagcatcattactacttctggtagctacaactgacaagaaatg 627
Query: 121 gagatgcaactcagtgggagaggactgacctagaattcctgaggttctagactccattcc 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 626 gagatgcaactcagtgggagaggactgacctaggattcctgaggttctagactccattcc 567
Query: 181 agaacaataataaatatttttttagataaacaaatgaaatgtctgtcactgtgcctgtaa 240
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct: 566 agaacaataataaataaataagtagataaacaaatgaaatgtctgtcactgtgcctggaa 507
Query: 241 ggtgggggcatactggagaaaacatcatcctgtacctggcttgaaagagatgacgacatt 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 506 ggtgggggcatactggagaaaacatcaccctgtacctggcttgaaagagatgaggaca-- 449
Query: 301 ctgaagggacacttgggtcacattaaataactctccttattctgcatttttctgttactt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 -tgaagggacacttgggtcacattaaataactctccttattctgcatttttctgttactt 390
Query: 361 gttaattgg 369
|||||||||
Sbjct: 389 gttaattgg 381
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 766
Length adjustment: 9
Effective length of query: 360
Effective length of database: 757
Effective search space: 272520
Effective search space used: 272520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
