Query= MSMg01no289_n04.b1 MSMg01no289_n04.b1 CHROMAT_FILE:
MSMg01no289_n04.b1 PHD_FILE: MSMg01no289_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:13 2005
(244 letters)
>mm_chr4_82884636_82885279
Length = 644
Score = 406 bits (210), Expect = e-118
Identities = 233/244 (95%), Gaps = 6/244 (2%)
Strand = Plus / Plus
Query: 1 gagaattaattacatgtacgtgtaaatgatgttcattgtattatgcgcatgacagtaaaa 60
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 201 gagaattaattacatgtacgtgtaaatgatgttcattgtagcatgcttatgacagtaaaa 260
Query: 61 actggaaaacactacataacactcaaaggagaatggttaaataatcccctaaataaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggaaaacactacataacactcaaaggagaatggttaaataatcccctaaat------ 314
Query: 121 aaaaaaaaaaggttcctaaaaccacacaggagaactggggtgcctttgtgcactgaactg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 315 aaaaaaaaaaggttcctaaaaccacacaggagaactggggtgcctttgtgcactgaacag 374
Query: 181 ctatccttgaaaaagaaagctttgttttgaaaatccaagtcaaattgtgtttttcacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctatccttgaaaaagaaagctttgttttgaaaatccaagtcaaattgtgtttttcacagg 434
Query: 241 ggct 244
||||
Sbjct: 435 ggct 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no289_n04.g1 MSMg01no289_n04.g1 CHROMAT_FILE:
MSMg01no289_n04.g1 PHD_FILE: MSMg01no289_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:13 2005
(287 letters)
>mm_chr4_83042850_83043536
Length = 687
Score = 524 bits (271), Expect = e-153
Identities = 283/287 (98%)
Strand = Plus / Minus
Query: 1 tcctggactaaatagctctgccacgtgatagtcacatccgtgagatggaccttactggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 487 tcctggactaaatagctctgccacgtgatagtcacatccgtgagatggatcttactggtt 428
Query: 61 gtcttgatgccggagagaagccttaactcagggaaaacaggatggttggttctcccttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 427 gtcttgatgccggagagaagccttaactcagggaaaacaggatggttggttcttccttca 368
Query: 121 cagactctaaataaaacaaccagtgaattaaacccatgagctagcaattaaggaggacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cagactctaaataaaacaaccagtgaattaaacccatgagctagcaattaaggaggacac 308
Query: 181 acagaatctggtttcctctgctcactggacgacgtaaggcagatcccagggggagatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acagaatctggtttcctctgctcactggacgacgtaaggcagatcccagggggagatctt 248
Query: 241 gtatctccctgtcaagaccagttcgtggtgtccaatctcagctcatg 287
||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 247 gtatctcccagccaagaccagttcgtggtgtccaatctcagctcatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
