Query= MSMg01no290_i08.b1 MSMg01no290_i08.b1 CHROMAT_FILE:
MSMg01no290_i08.b1 PHD_FILE: MSMg01no290_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:06 2005
(320 letters)
>mm_chr4_95174249_95174968
Length = 720
Score = 545 bits (282), Expect = e-159
Identities = 308/320 (96%), Gaps = 10/320 (3%)
Strand = Plus / Minus
Query: 5 gaattccaacagtgagtccatgacactggaacgacctgtgagcgtcccgatgatacattt 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 519 gaattccaacagtgagtccatgacactggaacgacctgtgagtgtcccgatgatacattt 460
Query: 65 acgcaat---attattccctgagagtaaaaactcataagtgatggaataaggctaggttc 121
||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 acgcaataggatt-tt--ctgagagtaaaaactcataagtgatggaataaggctaggttc 403
Query: 122 tggcctgaaagtctgatttcaaaggccacatgttttatacctgctagttggagagagaga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tggcctgaaagtctgatttcaaaggccacatgttttatacctgctagttggagagagaga 343
Query: 182 tcattttggtggttctctctctctctc--ttttttttccccaacaaagcatgggaattgg 239
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 342 tcattttggtggttctctctctctctcttttttttttccccaacaaagcatgggaattgg 283
Query: 240 cattcttttcccatccacctgaacaagactaagagaatgcatcaggcatcctatacatgc 299
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 282 cattc--ttcccatccacctgaacaagactaagagaatgcagcaggcatcctatacatgc 225
Query: 300 atccttaatagagacttcat 319
||||||||||||||||||||
Sbjct: 224 atccttaatagagacttcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_i08.g1 MSMg01no290_i08.g1 CHROMAT_FILE:
MSMg01no290_i08.g1 PHD_FILE: MSMg01no290_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:06 2005
(234 letters)
>mm_chr4_95019086_95019719
Length = 634
Score = 445 bits (230), Expect = e-129
Identities = 233/234 (99%)
Strand = Plus / Plus
Query: 1 actttgctgctgacgtctcagaggccccttcagttcacagcatttgagcatcccaaagtg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgctgctgaggtctcagaggccccttcagttcacagcatttgagcatcccaaagtg 260
Query: 61 ctgtacctggtgtgctgtttctgagtcctgacggaactgagagaaatcgtgtgtaacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtacctggtgtgctgtttctgagtcctgacggaactgagagaaatcgtgtgtaacatg 320
Query: 121 cctgacagaacatatttagtcagtgatggctgcctccacccttctgtctcccatataact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgacagaacatatttagtcagtgatggctgcctccacccttctgtctcccatataact 380
Query: 181 cattctcccccacccttgtagtttctcatctcttctgagaaatcatcagcaaca 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattctcccccacccttgtagtttctcatctcttctgagaaatcatcagcaaca 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
