CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGTTGTGTGCAAAGATGAGAAAATGCCCCATAAGGGAGGGGAGG
GGGCCCCCTTTTTCTTTTACTCCCTGCTTCTCGGGGAGTTCCCCAATGGA
AACTCTTACATTGCAGGTCTACTTTCAGCTTGGGCCAAGGCCTCTGGCTT
CCGGTCAGCAAAAGCTTTGTGGTGCCACCGGTGGAGCTGTCCATCAACCC
CCTGGCCAGCTGCAAGACGGATGTGCTCGTCACAGAAGACCCTGCGGATG
TCAGGTAGGGAAGCCACCTTTAAGATCCTGTGTAGAGGACTTCTTGTAGC
TGAGGAAGCACTTTGTTGTAGCTCCCCCCCGCTGATAGAGGTCTGGAAGA
TGTAAAGAATGGTGTCAAATCCATCTGATCCTAAATTCTAGAAGCACCTT
CCATTGTTGTGCAGCACTGACTTGTATTCTGCCACCATGGCTCTCCAACA
AACAAATAAATAAATAAATAAATAAACCTATCCACGGCTGATATAAGGCT
GATACATGATCCCACTCACTGTGAGATTTATTATGGATGAGCTTATCATA
AAATCATTAATTAGCAGTATTTGGAGAGGCTTGAAAGTCTAAAGAGTATG
TTGTTTTCCATTGTGAGGACATTTTGAAAAAACCCAAGGATTTGAATTCC
CAATCTGCCAACCCCTTTGATCTTTATTGACGAA

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCATGAACTGTTGCTTGAAAACAGAGT
GAGGGCAGTTGGCTTTCTTGCTCCCAAAGAGCCTGTTAAATGCTGCCTGG
AATAGTCATGAGTGGGGAAGGCCAAACTGCTCCCCCAACAACCCCTCCCA
TCCCAATCCTCCTCCCTTTCAAACTTTATCTGTCAACAAGGCCAACTAGT
CCAGCAACTAATACTGAAATTGATTTGTTCAAACAGGCTAGGCAAGACCC
CATAATTACTGGAAGTTTTAATCAACTCACGAAAGTTCAGTTGCCATTCA
ATTTGTACTGGGCCTTGATGCTGCCACGAAGGGAAGGACTGTATTGCACT
AAGAATGAAAGGGATCAATAGGTCCTGACTATGGAATAGCAGCTGTAGTC
CCCACCAGGGTCCTCCAGCCTTACGGTAGAAATGTCAGAGCATTCCCCAA
TTCCTGGGAGAGGTCCATGCACAAAACCAAATCCCCATCCCATGCAGACA
CCACAAACAGTTTCTATTCTCTTCAGGTTTCAAGCTGTGGGCAAATGTGT
CCATGTTCTGGTTGCCCTTGTCTTCCTAAAGAAACCTACATGCCTTATAT
TACAGCTCCTATGGTACTGTTTTGTGCATCTCTTCTTGACCTTTGACATT
ATAATACTCAGGAGACTGAGGGGAATGAAGT

Query= MSMg01no290_m08.b1 MSMg01no290_m08.b1 CHROMAT_FILE:
MSMg01no290_m08.b1 PHD_FILE: MSMg01no290_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:24 2005
         (290 letters)



>mm_chr4_65572437_65573126
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagaaaatgccccataagggaggggagggggccccctttttcttttactccctgcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 490 tgagaaaatgccccataagggaggggagggggccccctttttcttttactctctgcttct 431

                                                                       
Query: 61  cggggagttccccaatggaaactcttacattgcaggtctactttcagcttgggccaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cggggagttccccaatggaaactcttacattgcaggtctactttcagcttgggccaaggc 371

                                                                       
Query: 121 ctctggcttccggtcagcaaaagctttgtggtgccaccggtggagctgtccatcaacccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctctggcttccggtcagcaaaagctttgtggtgccaccggtggagctgtccatcaacccc 311

                                                                       
Query: 181 ctggccagctgcaagacggatgtgctcgtcacagaagaccctgcggatgtcaggtaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctggccagctgcaagacggatgtgctcgtcacagaagaccctgcggatgtcaggtaggga 251

                                                             
Query: 241 agccacctttaagatcctgtgtagaggacttcttgtagctgaggaagcac 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agccacctttaagatcctgtgtagaggacttcttgtagctgaggaagcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no290_m08.g1 MSMg01no290_m08.g1 CHROMAT_FILE:
MSMg01no290_m08.g1 PHD_FILE: MSMg01no290_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:24 2005
         (556 letters)



>mm_chr4_65421696_65422651
          Length = 956

 Score = 1036 bits (536), Expect = 0.0
 Identities = 551/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatgaactgttgcttgaaaacagagtgagggcagttggctttcttgctcccaaagagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agcatgaactgttgcttgaaaacagagtgagggcagttggctttcttggtcccaaagagc 260

                                                                       
Query: 61  ctgttaaatgctgcctggaatagtcatgagtggggaaggccaaactgctcccccaacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttaaatgctgcctggaatagtcatgagtggggaaggccaaactgctcccccaacaac 320

                                                                       
Query: 121 ccctcccatcccaatcctcctccctttcaaactttatctgtcaacaaggccaactagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcccatcccaatcctcctccctttcaaactttatctgtcaacaaggccaactagtcc 380

                                                                       
Query: 181 agcaactaatactgaaattgatttgttcaaacaggctaggcaagaccccataattactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaactaatactgaaattgatttgttcaaacaggctaggcaagaccccataattactgg 440

                                                                       
Query: 241 aagttttaatcaactcacgaaagttcagttgccattcaatttgtactgggccttgatgct 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagttttaatcaactcacgcaagttcagttgccattcaatttgtactgggccttgatgct 500

                                                                       
Query: 301 gccacgaagggaaggactgtattgcactaagaatgaaagggatcaataggtcctgactat 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 gccacgaagggaaggactgtattgtactaagaatgaaagggatcaataggtcctgactat 560

                                                                       
Query: 361 ggaatagcagctgtagtccccaccagggtcctccagccttacggtagaaatgtcagagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaatagcagctgtagtccccaccagggtcctccagccttacggtagaaatgtcagagca 620

                                                                       
Query: 421 ttccccaattcctgggagaggtccatgcacaaaaccaaatccccatcccatgcagacacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccccaattcctgggagaggtccatgcacaaaaccaaatccccatcccatgcagacacc 680

                                                                       
Query: 481 acaaacagtttctattctcttcaggtttcaagctgtgggcaaatgtgtccatgttctggt 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 acaaacagtttctattctcttcaggtttcaagctgtgggcaaaggtgtccatgttctggt 740

                           
Query: 541 tgcccttgtcttccta 556
           || |||||||||||||
Sbjct: 741 tgtccttgtcttccta 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)