Query= MSMg01no291_e23.b1 MSMg01no291_e23.b1 CHROMAT_FILE:
MSMg01no291_e23.b1 PHD_FILE: MSMg01no291_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:04 2005
(574 letters)
>mm_chr4_126394141_126395115
Length = 975
Score = 1013 bits (524), Expect = 0.0
Identities = 562/578 (97%), Gaps = 7/578 (1%)
Strand = Plus / Plus
Query: 1 ctgcctttcacagaagttaactcagcagctcagtgctgcatatgggaaacagcgcgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcctttcacagaagttaactcagcagctcagtgctgcatatgggaaacagcgcgtgct 260
Query: 61 aagaccctgatttctcctccttagatgccctgtttatagaatgcaactcaactgcctatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaccctgatttctcctccttagatgccctgtttatagaatgcaactcaactgcctatt 320
Query: 121 aaagtttctgtaaccgcttcttcctccccacacaccgtgcttctgtgaacacgtctgtga 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtttctgtgaccgcttcttcctccccacacaccgtgcttctgtgaacacgtctgtga 380
Query: 181 aggcgtgagaacagcccagaatctgccttacataattaaactggcagcagatatcggtgc 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcatgagaacagcccagaatctgccttacataattaaactggcagcagatatcggtgc 440
Query: 241 ttacatcaatatcacatacatggcatctgtccttttatatcatcccac----ccccgata 296
||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 441 ttagatcaatatcacatacatggcatctgtccttttatatcatcccacaaatct---ata 497
Query: 297 ccatcaccctcatcctaaggtgacctgccagagtgactgagatgagacaaacccaggtcc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccatcaccctcatcctaaggtgacctgccagagtgactgagatgagacaaacccaggtcc 557
Query: 357 agcccatggctgtccattcctttgtgagtcagataaggggaacccccatcactcatcttg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agcccatggctgtccattcctttgtgagtcagataaggggaacccccatcactcatcttg 617
Query: 417 gtgccaggccatgcgtcttagacaaactcaggtccccaaagcccttgatgcgagagctga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtgccaggccatgcgtcttagacaaactcaggtccccaaagcccttgatgcgagagctga 677
Query: 477 ttcgtattcatgaatggagcggggctccttttggacaggctccgttagccacaggaagaa 536
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 678 ttcgtattcaagaacggagcagggctccttttggacaggctccgttagccacaggaaaaa 737
Query: 537 gctttccaggactctgtatggaatagccctgtgaggct 574
|||||||||||||||||||||||||| |||||||||||
Sbjct: 738 gctttccaggactctgtatggaatagtcctgtgaggct 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space: 544260
Effective search space used: 544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_e23.g1 MSMg01no291_e23.g1 CHROMAT_FILE:
MSMg01no291_e23.g1 PHD_FILE: MSMg01no291_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:04 2005
(323 letters)
>mm_chr4_126553989_126554711
Length = 723
Score = 617 bits (319), Expect = 0.0
Identities = 322/323 (99%)
Strand = Plus / Minus
Query: 1 cagagaaaccctgtctcgaaaaaccaaaccaaccaaccaaacaaacaaaaaacgtgtaaa 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cagagaaaccttgtctcgaaaaaccaaaccaaccaaccaaacaaacaaaaaacgtgtaaa 464
Query: 61 tagtctacctagatacgactgaccgtctgcatgaataaatgctttatttgcaattttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tagtctacctagatacgactgaccgtctgcatgaataaatgctttatttgcaattttgaa 404
Query: 121 gtacaaaataaaataatagatatgtgaatacttaacatttgcaacaatcaattgttcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gtacaaaataaaataatagatatgtgaatacttaacatttgcaacaatcaattgttcata 344
Query: 181 agagtgctacaagagtttcagcagctagaggcaatgcatgctttctacagcaatttgagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agagtgctacaagagtttcagcagctagaggcaatgcatgctttctacagcaatttgagc 284
Query: 241 ataggatttaggagtgttttctcctctttttcctaatttttatttagaaattttttattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ataggatttaggagtgttttctcctctttttcctaatttttatttagaaattttttattc 224
Query: 301 agtatctcttcaacatttgttta 323
|||||||||||||||||||||||
Sbjct: 223 agtatctcttcaacatttgttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
