BAC Information

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BAC

Clone NameMSMg01-291H02
Chromosome4 (Build37)
Map Location 22,979,063 - 22,979,388
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
Downstream geneLOC625462, LOC383998, LOC100040464, LOC623873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291H02.T7 (MSMg01no291_h02.b1)MSMg01-291H02.TJ (MSMg01no291_h02.g1)
ACCAG420439AG420440
length738733
length of high quality
(start - end)
331 (46 - 376)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no291_h02.b1 PHD_FILE: MSMg01no291_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:13 2005CHROMAT_FILE: MSMg01no291_h02.g1 PHD_FILE: MSMg01no291_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCCTGGGTGTTAAAATGCTAATATTTCTATATAATTTGAATGA
ATGTTGATAGGGAAAGTTGAAAACATCTCTGTAACCATGGTCTTATCTAC
CTAACACTCAGATCATTAGCCAAAGTTACTCAATCAATAATTTAGCTCAA
AACTTGTCAATTTTGCCAAAAGATCTTTCAAATTTATTGTTTAGTATTGA
GCTGCTAAGTACATAAGTACATTTGATTTACAACTTTTTCTACTTCCCAC
AAGACATGTGGATTTCAAAGTTTCTAACACACACACACACACACACTCAC
ACACCACAGAGAATTATTTTTTTTCATTGACACTAGGCTCTTTCCTCATA
CAAGATGTTCCAAGCATCATTTCTCCTACCCCACCTCCTCCTAATCTCCT
CCCTCCACCCCTTCCTCCAGACTCACTGCCCCTCCATTTCCCTTCAGAAA
AGGATAGGCCTCCTAGAGGCCTCCAGCCAAACTCCACAAGACAAGGCAAA
ATTCCTCATATCGAGGCAAACTAGTAGGAAGAAATGAGTTCCAAGAGCAG
CCAAATGAGTCAGAGACACACCTGCTCCCACTGTCAGGAGTCCCACAAAG
ACACTCAGCTAAAAGCCGTAACAACACAGAGGACCTGATCCAGACACTTG
CAGGCCCTGTCCTTGTCATTTCAGTCTCCGGTGAGTCN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAGTTCTGTATCCCACTTTGT
AATTGGATATTTGGATGTTGGTATTTAACTTACTGGGCTCTTTATAAATT
TTGGGTACTAGTACTTGGTCAACTGTAGGATTGGTGAAAATCCATTTCTA
ACCTATAGGCTGCTGTTTTGTCCTATTGATAATATTATTTTCCTTACAGG
ATACTTTCAGTTTCATGAGGTCCCATTTATCATTGTTGAATTAAGACCCT
GAGCAATTGGTGTTCCCATCAAGAAATTGTCTCTCGTGTCAAGGGTATTT
TCCACCTTCTCTTCTATTATAACTACCCCCCCGTGTTTTATGTTAAGGTC
CTTAATCCACTTGGACCCGACTGTGAGAAATGAGATAAGTATGGTTCTAT
TTTATTCATCTACATGTAGACATCCAGTTAGTCCAGCACCACTTGTTGAA
GATGCTTTCTTTTTTCCATTGTATGGTTTTGGGCATATTTATCAAAAATA
ACGTGTGAGGGTTTACTTCTGGGTCTTCAAATCTATTCCATTGATCTACC
TGCCTGTTTTGAACCAACGCCATACGGTTTTTATAACTATTGCTCTGTAG
TACAGCTTGCAGTCAGGGATGGTGATTCTTCCCCAAGTTCTTTTATTGTT
AGGATTGGTTTTGCCATTCTGCTTTGTTGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_h02.b1 MSMg01no291_h02.b1 CHROMAT_FILE:
MSMg01no291_h02.b1 PHD_FILE: MSMg01no291_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:13 2005
         (331 letters)



>mm_chr4_22978860_22979590
          Length = 731

 Score =  596 bits (308), Expect = e-175
 Identities = 321/326 (98%), Gaps = 3/326 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgcctgggtgttaaaatgctaatatttctatataatttgaatgaatgttgat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgcctgggtgttaaaatgctaatatttctatataatttgaatgaatgttgat 263

                                                                       
Query: 64  agggaaagttgaaaacatctctgtaaccatggtcttatctacctaacactcagatcatta 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggaaagttgaaaatatctctgtaaccatggtcttatctacctaacactcagatcatta 323

                                                                       
Query: 124 gccaaagttactcaatcaataatttagctcaaaacttgtcaattttgccaaaagatcttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccaaagttactcaatcaataatttagctcaaaacttgtcaattttgccaaaagatcttt 383

                                                                       
Query: 184 caaatttattgtttagtattgagctgctaagtacataagtacatttgatttacaactttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaatttattgtttagtattgagctgctaagtacataagtacatttgatttacaactttt 443

                                                                       
Query: 244 tctacttcccacaagacatgtggatttcaaagtttctaacacacacacacacacacactc 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 tctacttcccacaagacatgtggatttcaaagtttctaacacacacacacacacacacac 503

                                     
Query: 304 --acacaccacagagaattat-tttt 326
             ||||||||||||||||||| ||||
Sbjct: 504 ttacacaccacagagaattatctttt 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)