BAC Information

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BAC

Clone NameMSMg01-292H11
Chromosome4 (Build37)
Map Location 19,601,095 - 19,601,454
singlet/doubletsinglet
Overlap geneWwp1
Upstream geneLOC667251, LOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik
Downstream geneSlc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292H11.T7 (MSMg01no292_h11.b1)MSMg01-292H11.TJ (MSMg01no292_h11.g1)
ACCAG421179AG421180
length784771
length of high quality
(start - end)		362 (45 - 406)335 (77 - 411)
definitionCHROMAT_FILE: MSMg01no292_h11.b1 PHD_FILE: MSMg01no292_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:32 2005CHROMAT_FILE: MSMg01no292_h11.g1 PHD_FILE: MSMg01no292_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCGTAATCAGATACATTTTTTTGTGTGAAACTACTTTTTTGTGT
AAACATTTTTTGTGTGTAAAACATTAAATAATTTCTAATAAATGAACCAC
AGATATATAATGAGCACTATCTAGATGCAGGCATTTATTTTTCTCTCAAT
CCTTGGTACAGTTTGAAATTATATTTAAATAGTAGGTAAAAGTAGAAACT
ATCCAAGTATGGTAGTGCATGCCAATGACCCCTGCACGTGCAAGACAAGG
GAGGCTAGTGAATTTAAGTTTAGCATGGGTTATATAGGGAGAACTTTATC
TAAAATATACATCAATATATGTTACTAGATATGCAAATATCAGATCTGCT
GTGTCTGATTCCACTCCCCCACAANAAAAATATTATATCCAAGACAAATT
AAAACATGTTCACAGCAAAACTTGCTCATAAGTGTTTATGGAAGTCCTAT
ACCTTATCGTTAATTAGCAATTTCAATGTCTGTCTATTGACAGACTATTT
ACATGTGTTTTTTCCACACAGTACTAATATTTGTTCTAAGTTCCGATGTA
GAATTGCATTTTTGTATTCTATCTCATTATACTCTCTACCCCCCGTTTTC
GTGTTTCTATTTCGCTCTAAGGTTATTATCCTATCCTATTTTTTCCACAC
ATTTATTTGTCTCCTATTTTTTTCTCCCCAATTTCTCTTTTGTTTCTCAC
TTTAAACTACGCCTACCACTTTTTCTTCTCTCCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGCAGCATGGAGACTTTGTCA
AGCATTCAAAAATCAAATAAAATTACAGAAGAATACAGGCAAGAAGCTGA
GTGACTCAGAAGAATCAGAAGAACCCCATAAACAACTACCAAACCCAGAC
ACTAGGCACATGCCAACAAGAGCCTACTGACAGGAGCCTGATATAGCTGT
CTCCTGCGAGGCTCTGCCAGTGCCTGGCAGATACAGAAGTGAATGCTCAC
AGTCATCCGTTGGACGGAGCACAAGGTCCCCAATGAAGGAGCCAGAGAAA
TAACCAAGGAGCTGATGGGGACTGACGCCCCATAGAAGGAACATTAATAT
GAACTAACCAGGGCCCCCCCACCTCCATGGAATATACCACCAATCAAAGA
AAACACATGGTGGAACTTGTGGCTCTAGCTATATTTGTAGTAGAGGGTGG
CCTAGTCAGTCATCAATGGGAGGAGAGGCCTTTGGTCCTGTGAAGGCTGT
ATGACCCAGTATAGGGGAATGTCAAGACCTGGAATGGGAGCGAGTGTTTT
TCCTCATCTCCTTTTATACTCTTTAACCTATATAAACCATCTCTTTTTTG
TTTTCCACACTNTTTATCCCGTTCCTAACCCTCCTTCCTTCACCCACCTT
TTTTTCTCTTTCATCGATTCTCTTTCCTCCCGTCTTCCTTTTCTCGTCTT
TTTTTTTCCCTTGCGGTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_h11.b1 MSMg01no292_h11.b1 CHROMAT_FILE:
MSMg01no292_h11.b1 PHD_FILE: MSMg01no292_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:32 2005
         (362 letters)



>mm_chr4_19600891_19601654
          Length = 764

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%), Gaps = 2/360 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcgtaatcagataca-tttttttgtgtgaaactacttttttgtgtaaaca-t 62
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 564 gaattctttcgtaatcagatacattttttttgtgtgaaactacttttttgtgtaaacatt 505

                                                                       
Query: 63  tttttgtgtgtaaaacattaaataatttctaataaatgaaccacagatatataatgagca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttttgtgtgtaaaacattaaataatttctaataaatgaaccacagatatataatgagca 445

                                                                       
Query: 123 ctatctagatgcaggcatttatttttctctcaatccttggtacagtttgaaattatattt 182
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctatctagatgcagacatttatttttctctcaatccttggtacagtttgaaattatattt 385

                                                                       
Query: 183 aaatagtaggtaaaagtagaaactatccaagtatggtagtgcatgccaatgacccctgca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaatagtaggtaaaagtagaaactatccaagtatggtagtgcatgccaatgacccctgca 325

                                                                       
Query: 243 cgtgcaagacaagggaggctagtgaatttaagtttagcatgggttatatagggagaactt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgtgcaagacaagggaggctagtgaatttaagtttagcatgggttatatagggagaactt 265

                                                                       
Query: 303 tatctaaaatatacatcaatatatgttactagatatgcaaatatcagatctgctgtgtct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatctaaaatatacatcaatatatgttactagatatgcaaatatcagatctgctgtgtct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 764
Length adjustment: 9
Effective length of query: 353
Effective length of database: 755
Effective search space:   266515
Effective search space used:   266515
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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