BAC Information

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BAC

Clone NameMSMg01-293A17
Chromosome4 (Build37)
Map Location 31,761,032 - 31,761,314
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040864, LOC100040891
Downstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293A17.T7 (MSMg01no293_a17.b1)MSMg01-293A17.TJ (MSMg01no293_a17.g1)
ACCAG421597AG421598
length1,233710
length of high quality
(start - end)
---287 (70 - 356)
definitionCHROMAT_FILE: MSMg01no293_a17.b1 PHD_FILE: MSMg01no293_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:18 2005CHROMAT_FILE: MSMg01no293_a17.g1 PHD_FILE: MSMg01no293_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAGAGCGGACTACTAATGTATGCTTCTCTAACGAGCGAGGGAGGGGTG
GCTAGGAGGTGAGTGCAGACCTCTATAGATACCCAAAAGAACCACTGCTA
CCCAAAATAGCAATCGATGGGTAAGGGCGGCGGCCCGCGATAAACTGGGT
AGAGCGAAAATACGACAATCTGTGCGAAACGCGAAGACAGAAAGGGCAGA
TACTATCCGCCGGCGGGCCGGTATACGGGCATTTCTGAAAATAAATATAT
CTGCCGCCCGTGTCATATACCGCACTTACTCGTCACACCTTTTTACGCAT
TGAACACGCAACTTCTCAATGCACATATCAGACTGACAGCCTTTCTACAC
AACGATATTAAGCACGCGTTCTCGCGCGCGCTTCATAGTTAAGTATAGTT
CTAGAATATCTCTATACAACAGATGAGATTATGGCGAGAAGATAGGAAAG
AGGAGCCCGAAGAACATAACGGCGCGTGCCATCCCTGCTGCGCGAGAGAA
GAGAAGAGGAGCGTCGGGGGTTGCACTGCGATGTATAGCCCTATCCCAAC
ACGTCGTAGATGCGCGGAATTTCGATCGCCGCGGGTAGATGTTTAACATG
CAGCACACGCGTATACTACCCACACGCATATATCCGCCGCGTCCCCCTTA
CTGCTTATTAGCCGGTGATTACCGCGCCTATTTATGCTGGTGTATTNTCA
CGAGCATGAGGGAGAGGGTCAGAGCAGAATAGTCGGGTGACGAGATACAC
TATATCACGATACGAAGTTATTATCGCGCCTTCCCGTCCACCTGCTTGAC
ATACTTAGTATCTGTCGCACTCCCACCTGCTCATAGTGCTGCGGAGACGA
TATTCACAATCAGCACAATACCGTGCTCACGCTCTGGCAGCCGCCGACAC
ACCCTATTCCACGCGCATAATTTCTTCATGAACGACGAATCGTGCTACTA
CGTGCCACACAATATAACTCCGCATCGCCACGCTAGAAGTGTGAGCGCAC
GAAGCGGGAGTACGNGCTGAGCGTGTGATAATAGCACCTAAGGTTTAACG
TGCCTGATCGCGGCGGCTCGAGCGCTGGTTGAACGTATGTGAGGTGATAT
AACGACCGCGCTACCCGCGCCGGACCTACGCTAGTATCAACGTTGAACCA
GACTGACGAGGTGATAAGAACAGAGAGATATGCGGTGACAGCGGCGCGGA
TTGTCACAGAGACCACACCTCATCTGCTTTGTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTACGCACATGCACACATACTGCATTATCTGGCTGATGT
TATTCTCAAAGGAAGCTAAACAGTTTTCTTAGGAACATGCTGTGTCAGTC
CCCAGTGTATGTTCCAGCCTTGATTGATACACTCCACTTGTGTGAACGAA
GTTAGTCCCCCTCAGTACCCTGTCTTAGTTTTCACTGTACTCTTTTGTAA
GGGCAAGGTAATGGCTACCCTAAACAGCAGAGCCAGTGAGGGGTCAGGCC
AGGTTATTTTTTCCATCTCACCGCCACCATGAACAATTTCCTGTGCCATT
CATGAGGGTGCAACAGCCCTTACAAATACATTGGTCCCTAGGGGACGTGA
CAACTTAAAACTGTCACCTAGGGGATTAAATTCCAATTTCTACATTTGGG
AGGAGTGCATGTATTGAAATCAAACAGACTGCCAAAGCTGCGAGGGTCTA
GCTGCGCATGGCCTGAATGCAAGACGTATATTTTATTCTCTGAATATAGG
GCACTGTGGAACATATTTTAGCATAAGCATAATAGAATTGTACGTTGTTT
GAGGGGAATGAGTATGGAACAGGCCATATCTCAGATAAGATTATGACAGA
ATGAATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_a17.g1 MSMg01no293_a17.g1 CHROMAT_FILE:
MSMg01no293_a17.g1 PHD_FILE: MSMg01no293_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:18 2005
         (287 letters)



>mm_chr4_31760831_31761517
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgcacatgcacacata 61
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 202 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtacatgcacacata 261

                                                                       
Query: 62  ctgcattatctggctgatgttattctcaaaggaagctaaacagttttcttaggaacatgc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgcattatctggctgatgttattctcaaaggaagctaaacagttttcttaggaacatgc 321

                                                                       
Query: 122 tgtgtcagtccccagtgtatgttccagccttgattgatacactccacttgtgtgaacgaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtgtcagtccccagtgtatgttccagccttgattgatacactccacttgtgtgaacgaa 381

                                                                       
Query: 182 gttagtccccctcagtaccctgtcttagttttcactgtactcttttgtaagggcaaggta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttagtccccctcagtaccctgtcttagttttcactgtactcttttgtaagggcaaggta 441

                                                      
Query: 242 atggctaccctaaacagcagagccagtgaggggtcaggccagg 284
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atggctaccctaaacagcagagccagtgaggggtcaggccagg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)