BAC Information

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BAC

Clone NameMSMg01-293G06
Chromosome4 (Build37)
Map Location 21,491,567 - 21,491,777
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293G06.T7 (MSMg01no293_g06.b1)MSMg01-293G06.TJ (MSMg01no293_g06.g1)
ACCAG421856AG421857
length733758
length of high quality
(start - end)
221 (39 - 259)243 (69 - 311)
definitionCHROMAT_FILE: MSMg01no293_g06.b1 PHD_FILE: MSMg01no293_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:47 2005CHROMAT_FILE: MSMg01no293_g06.g1 PHD_FILE: MSMg01no293_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
AGGGCACATATTTATTTTAACAAAACCACAGATTTGATTTGCTGGCACTA
TGTTTTATCCTCTTGCCATAAAAAATTTAGATGTAAGCTTATGTGCCATT
TGAGAATTATAGCTGTAAACAGATGGTTTATTGATTGGATTTAGTTGAAC
TATTTTTATTGTTTTCACATCAGCTCATGATGTAGTGCCCCTCATACTTG
GTTTTAGCGACAGGCTTTATAAAGTCATACAAGCTGTAAGTGAAAACATC
TAGAAATTGTGCAGTGTTCTAATGTCCAGGCATCAGTTGGTATTCAGCTA
AATATCTTTTTTTTGACCCCCCCTCCCCCAATAATAATCATCACCCATCT
TGCTTATTTGACACCCCCACACAAGAACTCAAGACCTTCTGCTGTATGGT
GAACATTATTTTGATTGATATTCTGTGCAGTGACACTCTCTGTGTTAGTT
CTCATGCATGTGCGCATACGTGCATATAGAGCCTATATATCATCCTCATA
TACTGGTCCTCATCAGTCGCCTATACTAGTTTTTTTATTCACCACCCTCT
CATCCGTTCCTGTGCGACCCCCATTATTTGCCCCCACCTGGATATTGAGC
CTACCATGCCTTCTCGCTTCTACCCCCTTGATTACAATTACAACGCCTAC
CCACCCAACCTTTTACGTTTTATTTCTTCCCAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCTGAGAAGCA
CCTGAAAAACTGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCATCCCACACCAGTCAGAATAGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAATCCT
CCATTGTTAGCAGTATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GATGGTTCCTCATAATATTGTACATAATACTACCAGAGGATCCCACAATA
CATCTCTTGGTCACTTCCANAACANACCCCTCAACTGGTTAGTAGGACAC
TTGGTCCACTACCCCCCCACATATAACAATAAAAAATAGGTGGGGGGGGG
AGGAGAACCTAGATGTCTCTCACCAGAGGACTGGATATTAAAAATTGTGG
TACTTTTACTCAACAGAGATATTACTCTCCTATTTCCAGGAGTGAACTCA
TGAAATCCCTATCCTCAATGCACGGACCTGGACGGGCACCTATCCTTGCC
GGAGGTTACCACCTTCCCCCACATAACTTCCCACCTTATTGTTCTTCACT
GATATTTCGCACATCAAGTCTCTTTAACTCTTCTATTTCCCGTACATCTT
AACATTACGTTTTTGCACTCTATCTGTGATCCTGGACTTAATGGCTCATT
CTAATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_g06.b1 MSMg01no293_g06.b1 CHROMAT_FILE:
MSMg01no293_g06.b1 PHD_FILE: MSMg01no293_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:47 2005
         (221 letters)



>mm_chr4_21491360_21491979
          Length = 620

 Score =  387 bits (200), Expect = e-112
 Identities = 209/212 (98%), Gaps = 1/212 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcaaagggcacatatttattttaacaaaaccacagatttgatttgctggcactatgttt 67
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 418 ttcaaagggcacata-ttattttaacaaaaccacagatttgatttgctggtactatgttt 360

                                                                       
Query: 68  tatcctcttgccataaaaaatttagatgtaagcttatgtgccatttgagaattatagctg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tatcctcttgccataaaaaatttagatgtaagcttatgtgccatttgagaattatagctg 300

                                                                       
Query: 128 taaacagatggtttattgattggatttagttgaactatttttattgttttcacatcagct 187
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 299 taaacagatggtttattgattggatttagatgaactatttttattgttttcacatcagct 240

                                           
Query: 188 catgatgtagtgcccctcatacttggttttag 219
           ||||||||||||||||||||||||||||||||
Sbjct: 239 catgatgtagtgcccctcatacttggttttag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 620
Length adjustment: 9
Effective length of query: 212
Effective length of database: 611
Effective search space:   129532
Effective search space used:   129532
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)