BAC Information

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BAC

Clone NameMSMg01-293L03
Chromosome4 (Build37)
Map Location 134,739,424 - 134,739,975
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
Downstream geneClic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293L03.T7 (MSMg01no293_l03.b1)MSMg01-293L03.TJ (MSMg01no293_l03.g1)
ACCAG422076AG422077
length741734
length of high quality
(start - end)
568 (46 - 613)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no293_l03.b1 PHD_FILE: MSMg01no293_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:11 2005CHROMAT_FILE: MSMg01no293_l03.g1 PHD_FILE: MSMg01no293_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACAATTTTTAAAGAGCAGTTTTCGGGTCATAGCAAAACTGAGAG
GAGGACTATATAGCAATCATAACACACACACACACACACACACACACACA
CACACACACACACACACACACACACGAGCTCCTCCTCCAACATCAATACA
GCATTATCATTTAGAGGCATGACCACCATAGCCACACAACTGTCCCTGCT
GAAGAACCAACAAGGACAGAGCACTTCTGTCCAAAGTCCTTGCCTGTTCC
ATGTCTGAGAGTTTGCTCTCGGTTGGCCCTTCTGTGGGTTTGCACAGATG
ACAAAGATGTGTCAAATCTCTGTGAGCCAGCCACTCCACCCTTCACCACC
TTCAGCACTCAGCCCCTGACCCCCTGACCCCTGACCACACTCAATGCGAT
GATAGTTTTCGTTTCCTAGAACGTCACATACTTCTGACACCTCACATTAT
TTAGCCTTTCTAGACTTAATAATATGGAATTAAGGTGTTCCCATCCTGCA
GGAATTGGTTCTCCTGTTCCACTATGCTGGTCCTGGGGACGGAACTCAAG
TCATCAGGCTTAGAAGAGGTGCCTCTACCTGCTAAGCTACCTTGCTATCC
ACCCCTGCTGTCTGCTTGTTTATAAGAAAAATTCATTATGCCCCCTGCGA
GGGAACTATTGGAAAGGGGGGCTCCCCGTTCCTTTCATGCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGACAGCCAGGGCTACACATTT
GGAACAAGGTATTACTGAGTAGCTCCGGCTGTTCTGGAACTCATAGATTT
CCTATTTCCTTAGTGCCAGGGTTAAAGGCCTGAACCATCATGGGGTTTCT
TTTTTGTTTTGTTTTATTTTATTTATTTCAGCCAGGCAGTGGTGGCGCAC
GCCTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGTGGACTTCTGAGTTC
AAGGCCATCCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGGCTACACA
GAGAAACCCTGTCTCGGAATATCAAAAAAAAAAAAAGGTTTATTTATTGT
ATTTATATGAGTACACTGTCACTGTCTTCAGACACACCAGAATAGAACAT
TGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTG
AACTCAGGACCTCTGGAAGAACAGTCAGTGCTCTTAACCACTGAGCCATG
TCTCCAGTCCAGGGTTTTTCTTTATACTCAGAATCCTCAGACATCCTCTG
CCTCCCAGGTGCTGGGATTTCAGGCTTGATCCATACCCATCACATCCACT
ATTAAATATTAAGAGAAGCCTAAGTCAAGATTTTGACCAGAGGGCCACAA
TTCTTTGTGAGAAACAAAGGTTGAGGATAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_l03.b1 MSMg01no293_l03.b1 CHROMAT_FILE:
MSMg01no293_l03.b1 PHD_FILE: MSMg01no293_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:11 2005
         (568 letters)



>mm_chr4_134739210_134740177
          Length = 968

 Score = 1004 bits (519), Expect = 0.0
 Identities = 547/563 (97%), Gaps = 11/563 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaacaatttttaaagagcagttttcgggtcatagcaaaactgagaggaggacta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattcaacaatttttaaagagcagttttcgggtcatagcaaaactgagaggaggacta 274

                                                                       
Query: 64  tatagcaatcataacacacacacacacacacacacacacacacacacacacacacacaca 123
           |||||||||||           ||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tatagcaatca-----------cacacacacacacacacacacacacacacacacacaca 323

                                                                       
Query: 124 cacacacgagctcctcctccaacatcaatacagcattatcatttagaggcatgaccacca 183
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacacatgagctcctcctccaacatcaatacagcattatcatttagaggcatgaccacca 383

                                                                       
Query: 184 tagccacacaactgtccctgctgaagaaccaacaaggacagagcacttctgtccaaagtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagccacacaactgtccctgctgaagaaccaacaaggacagagcacttctgtccaaagtc 443

                                                                       
Query: 244 cttgcctgttccatgtctgagagtttgctctcggttggcccttctgtgggtttgcacaga 303
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttgcctgttccgtgtctgagagtttgctctcggttggcccttctgtgggtttgcacaga 503

                                                                       
Query: 304 tgacaaagatgtgtcaaatctctgtgagccagccactccacccttcaccaccttcagcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgacaaagatgtgtcaaatctctgtgagccagccactccacccttcaccaccttcagcac 563

                                                                       
Query: 364 tcagcccctgaccccctgacccctgaccacactcaatgcgatgatagttttcgtttccta 423
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 tcagcccctgaccccctgacccctgaccccactcaatgcgatgatagttttcgtttccta 623

                                                                       
Query: 424 gaacgtcacatacttctgacacctcacattatttagcctttctagacttaataatatgga 483
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 gaacgtcacatacttctgacacctcacattatttagcctttctagacttagtaatatgga 683

                                                                       
Query: 484 attaaggtgttcccatcctgcaggaattggttctcctgttccactatgctggtcctgggg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attaaggtgttcccatcctgcaggaattggttctcctgttccactatgctggtcctgggg 743

                                  
Query: 544 acggaactcaagtcatcaggctt 566
           |||||||||| ||||||||||||
Sbjct: 744 acggaactcacgtcatcaggctt 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)