BAC Information

Click to search

BAC

Clone NameMSMg01-294I14
Chromosome4 (Build37)
Map Location 20,077,216 - 20,077,494
singlet/doubletsinglet
Overlap genenone
Upstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream geneE130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I14.T7 (MSMg01no294_i14.b1)MSMg01-294I14.TJ (MSMg01no294_i14.g1)
ACCAG422683AG422684
length775737
length of high quality
(start - end)
136 (128 - 263)285 (68 - 352)
definitionCHROMAT_FILE: MSMg01no294_i14.b1 PHD_FILE: MSMg01no294_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:14 2005CHROMAT_FILE: MSMg01no294_i14.g1 PHD_FILE: MSMg01no294_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TCCTGATATAAATAAAAATGGGATTGTGAAATGTGCACGTCAGTGGATAG
AACTGGACAATATTCTCCTAAAAGATGCAACCCATACTCAGGAAGACAAA
TGCCCCATGTTTTCCCTTATATGTGGATCCTTGCTCCAAATTTTTATGTT
TCAGTTTATAGGCTGAAGTTGCCATATAAACCATGAAAGTGAAAAGAGAC
AATGCTGCAAGGGGGTGGGGAGAAAGAATGTTAATATAGTAGTAGGACAC
AGGTATTAGAAAGGAATATGAGGAAAATGGGGACTCTAACTATGGAGCAG
GAATGTTTGTTATTATCCCCCCCCCCCCCCGAAAGGGAGATAAAGACTAC
CAGAGATGATCGCCCCCGCAATAAAAAAACAATATTCTATCGGGCGACCT
GACATACTTATATATATATGTAATGTGATTATTACTAACACACAATAGCT
ATACTGGCATATAGAGTGAATATATATGTATACTTGTGCCAAGAATCCAT
ATTAACCTTCACTCCCTGTCATCTTTGACCCAGCGTTTTTTTGCAAACTA
TATAATTTTTTATTTTACTTCCCTAATTTCCCCTCGAGGGACAGTTAACA
TTATAATAATCGCTCCTTTACGTTTTTCGCTTTTCTCACACCCTCTCCAC
CCATCTTCCCAGTCAAACTTTTTTTTATTTTCCTATCCCCCTACAATTAT
CCTCTTTCATTTCATATCCAATTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTAACGGGTTAGAGGCTAGGAGATTTCTAAGTT
GTAAATAAAACAGATTATGCAAATGAATTCAGACCCTGGATTTAAATAGA
TCAGACAGAATTGAAATCAAACGGGATCTTTGATCATTTTTCCATAGTCC
TCCTGCTCAGCACATGAACAGGAGATACAATGAGGAGATAGTCTACCCTT
TTGTGAGTCATCAGGGCAGGAAAACCCAGGTCACCCACTTTGACCCGTTG
TTACAGGAGTTTGTTTAGAGCGTTACTGGAGCCACACTTGGTTTGACTCA
AGGATAATACTTTCCCCCCCCCCCCCCCTGTGTGTTTCCTGTTTCTTCCT
CTAGGGAACCCCCTAGACAGAAAAAAGAATGAGAGCTTGATGGCGGGCTT
ATGGATCTTAATTCAAAGCTCTCATCCCCAAACAGATCTCTGAGTCATGA
TGGAGAAGAGCAGGGTTTTAGCTCAGGGATCCCCCATTGTAGATATTCCT
GGATGCTTTTTAGCACCTTCAGTCATAGAGGTATTTAATGTCCTAGTTTC
TAATTCCATCATCAGCTTTCTTGCATGACCCTTCGCACTTGGTCACTGCG
TATTATGGGCCACTGTGCAATATGTGATATCTCCATTTTTAGAAAGCCTT
TCAAAGTTTTACTGCCTGTCTATGTCCCAACGTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i14.g1 MSMg01no294_i14.g1 CHROMAT_FILE:
MSMg01no294_i14.g1 PHD_FILE: MSMg01no294_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:14 2005
         (285 letters)



>mm_chr4_20077010_20077694
          Length = 685

 Score =  433 bits (224), Expect = e-126
 Identities = 266/280 (95%), Gaps = 2/280 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggttagaggctaggagatttctaagttgtaaataaaacagattatgcaaatgaattcaga 66
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 207 ggttaaaggctaggagatttctaagttgtaaataaaaccgattatgcaaatgaatccaga 266

                                                                       
Query: 67  ccctggatttaaatagatcagacagaattgaaatcaaacgggatctttgatcatttttcc 126
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 267 ccctggatttaaatagatcaaacagaattgaaatcaaacgggagctttgatcatttttcc 326

                                                                       
Query: 127 atagtcctcctgctcagcacatgaa-caggagatacaatgaggagatagtctaccctttt 185
           || || |||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct: 327 atcgttctcctgctcagcacat-aagcaggagatacaatgaggagatagtttaccctttt 385

                                                                       
Query: 186 gtgagtcatcagggcaggaaaacccaggtcacccactttgacccgttgttacaggagttt 245
           |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||
Sbjct: 386 gtgagtcatcagggcaggaaaacccaggtcacccgctttgacccgttgttggaggagttt 445

                                                   
Query: 246 gtttagagcgttactggagccacacttggtttgactcaag 285
           || |||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtgtagagcgttactggagccacacttggtttgactcaag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)