BAC Information

Click to search

BAC

Clone NameMSMg01-294K11
Chromosome4 (Build37)
Map Location 12,486,948 - 12,487,234
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294K11.T7 (MSMg01no294_k11.b1)MSMg01-294K11.TJ (MSMg01no294_k11.g1)
ACCAG422770AG422771
length725716
length of high quality
(start - end)
187 (432 - 618)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no294_k11.b1 PHD_FILE: MSMg01no294_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:23 2005CHROMAT_FILE: MSMg01no294_k11.g1 PHD_FILE: MSMg01no294_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCAATAACTTACTAAAAGAAATACAGGAGAACACTGCTAAAGAGTTAC
AAGTCCTTAAAGAATTTAGCCAAACACTGCTAAAGAGTTACAAGTCCTTA
AAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAA
CAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGA
CCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGC
TGGAGATAGAAACCCTTGTTATGTAAATCTGGAACCATAGATGCCAGCAT
CAGCAACTTTTTTTTTTTACACCCACCACAGAATCTCAGGTGCAGAAGAC
TCCATAGAGAACATCGGCACAACAATAAAAGAAAATGGAAAATGCGAAAA
GATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAA
ACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGA
CCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAA
GAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGAC
TGGACCATATTAGATATTCCTCCCGACACATAATAATCAGAACACCAAAT
GCCCTAATTAAAGATAGAATACTAN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAACTCAAGAGTGTTTTTGGAAAG
TTCAATTTCTTGGCTATTTGGCCATAAAATTAGAAAAGTGGCTGAATGAC
AAATATTAAACTTTGAATCCTCTTCAAAATGTATAATAATATGTGGCGCA
GCAGGAGTCTTTTTTCTCTCCCTCTGAAAATATAATTATAGAGCAAGAAA
TGTCTCGAAGAAGCGTTTGCCTCACTCTCCTCTACCTCCAGGCAGGTTAT
ATTGAATTATCACAGGCAGATGAAATTCTATTCTTTATTTCAAAAGTGAG
ATTGTAATTTTCCTANTTTACCACCCCCCCGCCCTCATCTAGGAACTCCG
CCCCAGCTTCTTCTCGCAAGCTCCTATGAGAACAACGTAACTCGAATCAG
CTGGATGAGATTCCTTTTGTTATAATTATATAAATTTGATATATAGAGAG
ATAACACAAATATAATAGATCTATAAAATATATGAAATCATATTGTATGT
GGATATGTATATAGAGATAATTGATCATATTTGTATTTAACTTCAATTTT
TTCTTTTTTCTTCTTGTGTGTGCATGTGTGTGCCTGTGTGTGTGTACACG
CATGTGTGTGTGAGCATGTGTGTGCGCTTATATGTATTTGTATTGCATTC
CCTAGTATGTGGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_k11.g1 MSMg01no294_k11.g1 CHROMAT_FILE:
MSMg01no294_k11.g1 PHD_FILE: MSMg01no294_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:23 2005
         (289 letters)



>mm_chr4_12486748_12487436
          Length = 689

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaactcaagagtgtttttggaaagttcaatttcttggctatttggccataaaattaga 60
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 487 agaaactcaagagtgtttttggaaagttcaatttcttggctaattggacataaaattaga 428

                                                                       
Query: 61  aaagtggctgaatgacaaatattaaactttgaatcctcttcaaaatgtataataatatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaagtggctgaatgacaaatattaaactttgaatcctcttcaaaatgtataataatatgt 368

                                                                       
Query: 121 ggcgcagcaggagtcttttttctctccctctgaaaatataattatagagcaagaaatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggcgcagcaggagtcttttttctctccctctgaaaatataattatagagcaagaaatgtc 308

                                                                       
Query: 181 tcgaagaagcgtttgcctcactctcctctacctccaggcaggttatattgaattatcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tcgaagaagcgtttgcctcactctcctctacctccaggcaggttatattgaattatcaca 248

                                                          
Query: 241 ggcagatgaaattctattctttatttcaaaagtgagattgtaatttt 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggcagatgaaattctattctttatttcaaaagtgagattgtaatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)