BAC Information

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BAC

Clone NameMSMg01-295B07
Chromosome4 (Build37)
Map Location 90,027,295 - 90,027,543
singlet/doubletsinglet
Overlap geneLOC619842
Upstream geneLOC664785, Dmrta1, Zfp352
Downstream geneLOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295B07.T7 (MSMg01no295_b07.b1)MSMg01-295B07.TJ (MSMg01no295_b07.g1)
ACCAG423076AG423077
length742737
length of high quality
(start - end)
315 (48 - 362)249 (79 - 327)
definitionCHROMAT_FILE: MSMg01no295_b07.b1 PHD_FILE: MSMg01no295_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:54 2005CHROMAT_FILE: MSMg01no295_b07.g1 PHD_FILE: MSMg01no295_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTAGTTATGAGCCCCATTTTTTAATGGAGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGTCCTTTATTTATATTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGGTCCTTTCCCAGTCTGTTGGTGGCC
TTTTTGTCTTATTTACTGTGTCTTTTGCCTTACAGAAGCTTTGCCATTTT
ATGAGGTCCCATTTGTCGATTCTCAATCTTACAGCACAAGCCATTGTTGT
TCTATTCAGGAATTCTTCCCCTATGTCCTTATCGTCGAGGATTTTCCCCA
CGTTCTCCTCTATATTTTTTTCTGCTCCCCCCCCCCCCCGTGAAGTTCCT
TGATCCACTTATATTTGACCCCCCCCCCAAAAAAGAAAAAAGGATGGACC
ATCCGGAGACTGCCCCAACCAGGGATCCATCCCATAATCAGCCACCATAC
ACAGATACTATTGCATATGCCAGCAAGATTTGCTGAAAGCACCCTAGTAT
TGCTGTCTCTTGTGAGGTTATGCCAGTGCCTGGCCCATATAGAAGTGGAT
GTTCTCAGTCTTCTATTATCTTGTAACTCTTGGCCCCCAGCGAAGGAGTC
TAGAGAAAGTACTTACTGTGTTGAAGGGATCTGTTACCCTTTCGGGTGGT
TCACCAATTTGATCTTATCTAGGATCTCTAATGCCTGATGTT
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCAGAAAAGGAGGTTATGA
TTTGATTGGGATGAAGGGCCTGACTATCACTGGGTGCTGCCATCTGACTC
CCATAGAGAGTCAGATGCCCTCCATTCCTGGTTGTCATATGACTGTAGTA
GGAGATCTGGTCACCTCTTAAAGTTATCTCAAGCTCACCCTGAAATGTCT
GGTCACATACATAAGCAAGGAGGTGATCCACAATTGGTTCCTGGTCTGGA
TAGATTCCAGAGAGAGCAATTTGATGATTATCAAAGGCAATCCTCTGACT
CTCACACATGACTGTATTTTTGATAACCACACTCCTGTCAGGGCTCAGTG
TCCTCATCCAGGATTCTTCACCGCACAGAGACTCCCTGGAATCAAGTACT
GCTATCTTCTCTCCAGAAGGGAGACATGTCTTGGGGGTGCTGTTGAGCTG
CATAAGCTGAGGGGATTCAGGGGATTTTTTTCTGCTCAGCAGACACAACT
TGCTGGTTTACAGAAGCAGTCTTACCTGGCTCTCCAAAATGGATATCAAT
GACTTTTCCCATGTTTACTGTTGAGCTCTGAGTACTGGTTGTCTCCTGTG
TGCTACAAGATGTATATACCATCACTGTTTGTTTCCCGTTACGCATCTCT
GAGCTTCGACCTGAGACAAGCTGTTTAGTCTCCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_b07.g1 MSMg01no295_b07.g1 CHROMAT_FILE:
MSMg01no295_b07.g1 PHD_FILE: MSMg01no295_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:54 2005
         (249 letters)



>mm_chr4_90027095_90027743
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcagaaaaggaggttatgatttgattgggatgaagggcctgactatcactgggtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tgttcagaaaaggaggttatgatttgattgggatgaagggcctgactataactgggtgct 260

                                                                       
Query: 61  gccatctgactcccatagagagtcagatgccctccattcctggttgtcatatgactgtag 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatatgactcccatagagagtcagatgccctccattcctggttgtcatatgactgtag 320

                                                                       
Query: 121 taggagatctggtcacctcttaaagttatctcaagctcaccctgaaatgtctggtcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 taggagatctggtcacctcttaaagttatctcaagctcaccctgaaatgtctggtcatat 380

                                                                       
Query: 181 acataagcaaggaggtgatccacaattggttcctggtctggatagattccagagagagca 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataagcaaggaggtggtccacaattggttcctggtctggatagattccagagagagca 440

                    
Query: 241 atttgatga 249
           |||||||||
Sbjct: 441 atttgatga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)