BAC Information

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BAC

Clone NameMSMg01-295D07
Chromosome4 (Build37)
Map Location 105,003,837 - 105,186,975
singlet/doubletdoublet
Overlap geneLOC433742, LOC665518
Upstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b
Downstream geneLOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295D07.T7 (MSMg01no295_d07.b1)MSMg01-295D07.TJ (MSMg01no295_d07.g1)
ACCAG423168AG423169
length751746
length of high quality
(start - end)
320 (48 - 367)251 (82 - 332)
definitionCHROMAT_FILE: MSMg01no295_d07.b1 PHD_FILE: MSMg01no295_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:04 2005CHROMAT_FILE: MSMg01no295_d07.g1 PHD_FILE: MSMg01no295_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,003,837 - 105,004,149)(105,186,725 - 105,186,975)
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGGTCACAACCACAGCCAGTAGAATACCAGCAACATGTTCTT
CAGCGACGATGTGCACCCACACAATCTACCAGCAAGTCCTTAGTCTTAGA
CAAAGGGTTCTATCGAGAATTAGCCAGGGACTTCCTCATGGCCATCCTGT
GGCCTCTCCTCATCCTCTAGTCTCTTTGGCAGTGCCCTGCACTGTTATGC
GGGAACATCTGGGGTCCTGAACACACATGCTCTGTTCCAGTCAGAAACAA
GCCTGTCTTTCCAGCTAGCTAAGATGTAAGCTAATTTAGGTCATCCTGGT
TGATCATTTTTTTTTTTTTGTTGTGCCCCCCCCCCGCCGATATCCATTGA
CATCTTATTTTTATAAAGCCCCCCTTTTCAACACAATTTATAGAGCAACA
AGTGATTTGCCCATTGCTCCTCTTGGGGGGATGGTGAGCTTGAAACCTCA
CTCTGTTGTCTCAGATTGATGCTGCTGCTTGTTAACGGCTGATCTGAGGG
GCTTTGAGGTTTATATCTAAGTGCTGGTGAGACCAGTCCAAGAACAATCT
TCCCCAAGGAGAAAGCATTGTGTGACTAGGTTCTGAGATGCGAAGTGTGG
GGTTATATTCACGGTTCAGGTTTAATCAGTGTGGCTGTCTCGTCTGATAT
GATGTATTTTATTTTAATATCATATTAATAGCGGTCGCGTACGTCCTAAT
G
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCACCAGCTGTATAGCC
TTAGGTAAGTCTGTACCTTTCTGAGTCCCAACATCTTTAGTTGTAAATGC
AAATAAAAACAGTAGTCTGGTTTACAAGGACTTGTGTTAAAGTAGAATGT
AACTTTGAATGGTTCTTCAAGTAGAAGGTCCTGATTTACCTAATATTTGG
TTTCTCTGTTGTTGGACATAATGGATAACAAGGTCATTTCTCTTTCAGTG
CTGGTACATGCTACACAAAGAATATATGATGTGCAGGTGAGAACACTAGT
TTTAGTGGCATATTTGTANTTCCCCCCCCCCCCCCCCCCCTTATCTAATA
GAAGAGCTCACTGATTGCCCCCCCCCCAAAAGAGAAAACTCTGAACTCGG
GGGTCCTCTCATCACATCACAGTCAACATCAGTAAATAACTGAGCCTTGC
TCCTCCTTATGTGTCCAAATGTTTATGTTTCCAGAATCTGCTTATAATTA
CCAGGAGCATATCTTTTTCCCATATTATGTTGATTTGGTAAAGTTGTTTG
TACTCGCTAGCCCCTCCTATAGGTCCAATTGCTTCCGATATATTGCGTAT
CGATGATCTACTTATGCCTTTAATCTTTGCGACGATTCCTTAAAAGCTCC
TATGTTTCCACTGTATTGGTGCCTTCCTTATGTTCAAAATAGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_d07.b1 MSMg01no295_d07.b1 CHROMAT_FILE:
MSMg01no295_d07.b1 PHD_FILE: MSMg01no295_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:04 2005
         (320 letters)



>mm_chr4_105003634_105004353
          Length = 720

 Score =  536 bits (277), Expect = e-157
 Identities = 304/313 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgggtcacaaccacagccagtagaataccagcaacatgttcttcagcgacgat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 204 ggaattctgggtcacaaccacagccagtagaataccagcaacatgttcttcagcgacgac 263

                                                                       
Query: 64  gtgcacccacacaatctaccagcaagtccttagtcttagacaaagggttctatcgagaat 123
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 gtgcgcccacacaatctaccagcaagcccttagtcttagacaaagggttctatcgagaat 323

                                                                       
Query: 124 tagccagggacttcctcatggccatcctgtggcctctcctcatcctctagtctctttggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 tagccagggacttcctcatggccatcctgtggcctctcctcatcctccagtctctttggc 383

                                                                       
Query: 184 agtgccctgcactgttatgcgggaacatctggggtcctgaacacacatgctctgttccag 243
           ||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 agtaccctgcactgttatgcaggaacatctggggtcctgatcacacatgctctgttccag 443

                                                                       
Query: 244 tcagaaacaagcctgtctttccagctagctaagatgtaagctaatttaggtcatcctggt 303
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 444 tcagaaacaagcctgtctttccagctagctaggatgcaagctaatttaggtcatcctggt 503

                        
Query: 304 tgatcattttttt 316
           |||||||||||||
Sbjct: 504 tgatcattttttt 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no295_d07.g1 MSMg01no295_d07.g1 CHROMAT_FILE:
MSMg01no295_d07.g1 PHD_FILE: MSMg01no295_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:04 2005
         (251 letters)



>mm_chr4_105186442_105187092
          Length = 651

 Score =  485 bits (251), Expect = e-142
 Identities = 251/251 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccaccagctgtatagccttaggtaagtctgtacctttctgagtcccaacatctttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgccaccagctgtatagccttaggtaagtctgtacctttctgagtcccaacatctttagt 475

                                                                       
Query: 61  tgtaaatgcaaataaaaacagtagtctggtttacaaggacttgtgttaaagtagaatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgtaaatgcaaataaaaacagtagtctggtttacaaggacttgtgttaaagtagaatgta 415

                                                                       
Query: 121 actttgaatggttcttcaagtagaaggtcctgatttacctaatatttggtttctctgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 actttgaatggttcttcaagtagaaggtcctgatttacctaatatttggtttctctgttg 355

                                                                       
Query: 181 ttggacataatggataacaaggtcatttctctttcagtgctggtacatgctacacaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttggacataatggataacaaggtcatttctctttcagtgctggtacatgctacacaaaga 295

                      
Query: 241 atatatgatgt 251
           |||||||||||
Sbjct: 294 atatatgatgt 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)