BAC Information

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BAC

Clone NameMSMg01-295G18
Chromosome4 (Build37)
Map Location 106,042,338 - 106,213,504
singlet/doubletdoublet
Overlap geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61
Upstream geneLOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
Downstream geneDhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295G18.T7 (MSMg01no295_g18.b1)MSMg01-295G18.TJ (MSMg01no295_g18.g1)
ACCAG423319AG423320
length761782
length of high quality
(start - end)		318 (45 - 362)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no295_g18.b1 PHD_FILE: MSMg01no295_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:21 2005CHROMAT_FILE: MSMg01no295_g18.g1 PHD_FILE: MSMg01no295_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,042,338 - 106,042,647)(106,213,224 - 106,213,504)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGTAAGATCTGCTCTCTACAAAACAAAACAAAAACAAAAAACTA
CCAGAAATAGAACTTAATTTCACCACTTGTGAATATGAGGGTTCCTTTGA
GATTACTAGAATTGAATTTGATTCATATCTACAGTCAACTGACTTTGTAA
TAAATTTGAGGTTGCTTCTGCTGCATTGAATTATTGGCTGATAAGTCCAT
TTGTCATATTTACTTTCTCATGAATTACATGACAAGTGTTCTGTGTAAAT
CTGTTTTAATAGAATTTTATTGTAATGTTTCTTTTAGGATGACAGCCTCA
AACAAGTTATTTTTTTGCATCACCCGCCCCCTTTCAGTATTTAGAGGCAC
ATCTGAAATTTCTGGCATTTTTCTTACAAGAAGCTACACTGTATCTTGGG
TGGAACCGAGCCAAAGAAATTTGGGAGTGCCTTGTGACTGGCCAGGACGT
CTGCGAGCTAGATAGAGAGGTAAGGCCTGGGGTTGTGGGTTAGTGACATT
GCACTAAATGCTGCCCTCCTCTGTGTGTCTCATGTCATCTGTGTTCTGCA
TCCTGTTTGCTATCATTGTGAGTATGTGAACACTGAATGGCACAGTAGGA
ACTGTAAGTACTAGGGAAAACATGTCTTAAAAGACATCCATGATAGACAT
AAGTGTGTGGGCTCTTTGATCGTTTTGCTTCAATTTGGCTACAACACTAA
AGCCAACAAAA

AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCTGTTGGGAATAGGCATATGGTTCT
GGGTCCAAATCTTGTTCTTCCACTTGCTATTTGTGTGGCCTTGATCTAAC
CTAGAGCAGATGTATACCCCAAACTGGATCATCTTGGTCTCTGCAGGTTT
GTGGTGAGAGCTGAGTGGAACAATTGCAGTTGCATGGTTTATCTCTCTTG
ATATCCCATTGGTCACTTAATACCCAGGAACCCCAAGGAGGGTTCATGCT
GGCTTGAAGAGTGGTGGTCCCCACCTTTCATTTCTGAGTGGAAACTCCTG
TCTGTTTTCTTAGGTCACCGNTCATTCCACGGTAGGAGTGTGTTAGAGAA
AGCATATGGGCCCCCTCTCAAAAAAAAAAAGAATTTTGAGGGGGGGTCCT
GTACTGCACTTCTTTCATATTGGGGGAACCCCAAAGTTCAAGGGCAGTGC
CTCTACCAAATCTCATTAAGGCTAGATCCTATCTTCACAGCTTTCTTGAA
CGCTACAGGTTATCTTCTTACCACTTGTACTACACTCCTAGGGACCGTTA
TAGCACAATGTATCACCTATCTTGATTTGTTTTACCCTGTTTTGTCCTAT
TTTCCCCGTTACTGTACGCCCACTGGCTTCCTTCTGGTTTCCCCCACCTT
CTATTTGTGACCCTTTTATTTCTGTTCTATATTCCCGCGGCCCCCCTTAT
TTCCCCTCCCCCCCCTTTTTTGCCCCTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_g18.b1 MSMg01no295_g18.b1 CHROMAT_FILE:
MSMg01no295_g18.b1 PHD_FILE: MSMg01no295_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:21 2005
         (318 letters)



>mm_chr4_106042134_106042850
          Length = 717

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagtaagatctgctctctacaaaacaaaacaaaaacaaaaaactaccagaaat 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagtaagatctgctgtctacaaaacaaaacaaaaacaaaaaactaccagaaat 264

                                                                       
Query: 65  agaacttaatttcaccacttgtgaatatgagggttcctttgagattactagaattgaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaacttaatttcaccacttgtgaatatgagggttcctttgagattactagaattgaatt 324

                                                                       
Query: 125 tgattcatatctacagtcaactgactttgtaataaatttgaggttgcttctgctgcattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgattcatatctacagtcaactgactttgtaataaatttgaggttgcttctgctgcattg 384

                                                                       
Query: 185 aattattggctgataagtccatttgtcatatttactttctcatgaattacatgacaagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattattggctgataagtccatttgtcatatttactttctcatgaattacatgacaagtg 444

                                                                       
Query: 245 ttctgtgtaaatctgttttaatagaattttattgtaatgtttcttttaggatgacagcct 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctgtgtaaatctgtttta-tagaattttattgtaatgtttcttttaggatgacagcct 503

                      
Query: 305 caaacaagtta 315
           |||||||||||
Sbjct: 504 caaacaagtta 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_g18.g1 MSMg01no295_g18.g1 CHROMAT_FILE:
MSMg01no295_g18.g1 PHD_FILE: MSMg01no295_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:21 2005
         (286 letters)



>mm_chr4_106212954_106213639
          Length = 686

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgttgggaataggcatatggttctgggtccaaatcttgttcttccacttgctatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agctgttgggaataggcatatggttctgggtccaaatcttgttcttccacttgctatttg 492

                                                                       
Query: 61  tgtggccttgatctaacctagagcagatgtataccccaaactggatcatcttggtctctg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 491 tgtggccttgatctaacctagagcagatgtataccccaaactggatcatcttggtctccg 432

                                                                       
Query: 121 caggtttgtggtgagagctgagtggaacaattgcagttgcatggtttatctctcttgata 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caggtttgtggtgagagctgaatggaacaattgcagttgcatggtttatctctcttgata 372

                                                                       
Query: 181 tcccattggtcacttaatacccaggaaccccaaggagggttcatgctggcttgaagagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 371 tcccattggtcacttaatacccaggaaccccaaggagggttcatgctggcttgaagagta 312

                                                    
Query: 241 gtggtccccacctttcatttctgagtggaaactcctgtctg 281
           ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 311 gtggtccccacgtttcatttctgagtggaaactcctgtctg 271


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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