BAC Information

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BAC

Clone NameMSMg01-295I17
Chromosome4 (Build37)
Map Location 9,704,141 - 9,704,448
singlet/doubletsinglet
Overlap genenone
Upstream geneChd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
Downstream geneGdf6, 4930448K20Rik, LOC666840, 1700123O12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I17.T7 (MSMg01no295_i17.b1)MSMg01-295I17.TJ (MSMg01no295_i17.g1)
ACCAG423408AG423409
length761764
length of high quality
(start - end)
312 (44 - 355)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no295_i17.b1 PHD_FILE: MSMg01no295_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:30 2005CHROMAT_FILE: MSMg01no295_i17.g1 PHD_FILE: MSMg01no295_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTTCTGACCACTTCTTTCAGACTTCTAACATATTTTTAGTTGCTG
CTTAACTGCTGGAATATGACAGGGGCTGCCTTAGTCATTTCTTCATTGAC
TAGATAACCAGCCAGGTTACTAAAGGACACAGCATTTCATACAAGCTGAA
TTAGATTTAGATTCCCTTTGTAGGATTGAGACACTGGGAAGTCATAGCAA
GGCCTGAAGCACAGGTGTGTTATGGGCGGAGGGTGACCAGCTCTAAACAG
ATATCAGCTCCCAGAGTAACCAATGGAAGGAAGAGAAAATGTGGCCTGGG
TTCCCAGTTCTGGGGACATGGCCTCTCCCAACACTGCTCTCTACCTAGAT
TTATTTTGCACCCTGCCATCCAGAGAGAAATTATGTATCTATCCTAATCT
GGACTTACGTAACTTTTCTGTCTATACAGGTACACATGCTTCAGTGCTAA
TCAATATGTAGGTTAGGAAATTTAAAAATAAAGCATTAGGAAAACAAAGG
GAAAACACTAAGACAAACCATATTTTCTTTTAAACGCTTCTTTGAGAGCT
AGAACTGAGCTGGGCATAGTGCACTCGCTTTTAATCCTATCACTGAGGAA
CAGGCAAGCCTGGTCTACATAGTGAGTTACACAACAGTGAGGGTCACATA
GGCCCTGTCTCAACCCCNAAATACAGCCCCACATACCTGGGTGCTAGTCA
GCAGAGACTTT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACCAAGTAGAAACAAAGAGAACTATA
CAAAGAATTTAAAAAGTAGGACCTGGTTCTTTGAGTAAATCAACAAGATA
AACAAACACTTAGCCAAACTAACTAGAGGACTCAGAGACAGTATCCAAAT
AAACAAAATCAGAATGAAAAGGGAAAACATAACAGAAACTGAGGAAATTA
AATAATAATAATAAGACCCTACTACAAAAGTCTATATTCAACAAAACTGG
AAAATCTAGATGAAATGGATGATTTTCTAGCCAGATACCAGGTACCAAAG
CTAAATCATTATCTTATAACCCACCCCCCCCGTCCCATAGCCCCCAAGAA
AATAGAAGCAATAATTAGAAGTCTCACAAACAAAAAAATCCCAGTGCCAG
ACAGTTTTAGTGCAGAATTATATGAGACCTTCAAAAAAAAACATAATACC
AATACTTCTCAAACTATTCCATAAAATTGAAACAGAAGGAACACTACCCA
ATTCTTACTATGAAGCCACAGTTAAACTGAAGCCTAAATCAGAAAAAGAC
CAAACAAAGAAAAGGAAGTTCAGACCAATTTCCCTTATGGATATCAATGC
AAAAATACTCAATAAAATTCTTGCAAACCGAATTCAAGAACACATCANAT
AGATCATCCACCGGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAA
CACCCGCAAGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i17.b1 MSMg01no295_i17.b1 CHROMAT_FILE:
MSMg01no295_i17.b1 PHD_FILE: MSMg01no295_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:30 2005
         (312 letters)



>mm_chr4_9703937_9704648
          Length = 712

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttctgaccacttctttcagacttctaacatatttttagttgctgcttaact 64
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcactttctgaccacttctttgagacgtctaacatatttttagttgctgcttaact 264

                                                                       
Query: 65  gctggaatatgacaggggctgccttagtcatttcttcattgactagataaccagccaggt 124
           ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctgggagatgagaggggctgccttagtcatttcttcattgactagataaccagccaggt 324

                                                                       
Query: 125 tactaaaggacacagcatttcatacaagctgaattagatttagattccctttgtaggatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactaaaggacacagcatttcatacaagctgaattagatttagattccctttgtaggatt 384

                                                                       
Query: 185 gagacactgggaagtcatagcaaggcctgaagcacaggtgtgttatgggcggagggtgac 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 gagacactgggaagtcatagcaaggcctgaaccacaggtgtgttatgggcggagggtgac 444

                                                                       
Query: 245 cagctctaaacagatatcagctcccagagtaaccaatggaaggaagagaaaatgtggcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagctctaaacagatatcagctcccagagtaaccaatggaaggaagagaaaatgtggcct 504

                   
Query: 305 gggttccc 312
           ||||||||
Sbjct: 505 gggttccc 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)