TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTCTTTTCTCCAGTGAGATAGTAAATCTGCCCCATTCTTACTCTGT
TACATACACAGCACTGTGTCCTCAGGAAATACCACACAATCTCCAGGGTC
TCCATCTCCTCCCTTGTTACATAAGATAGGAATAAAAGTTCCTCTCTGTC
TACTCCCAAAACTGTTAGGAGGCCAGACAACTAAAATACCTAGTGATTAT
AACTTATTTTCTATAGAAAGGAGCTATAGTACAAGCTTTATTATATTTCT
TTATAGCAATCATACAGGGCAGATACTTTTATAAATCTAATTTTTCAGGG
TAAAGCTTTTTTGACACAACCCACACAGCAGTATGGTGGCAGGATCCAAA
TCAAGGAATATTTAAAGCAAAGCTTTCTCCTAACCATTTAATTGTATTAT
ATTCTCATATAAGAACAGCTTCTATTGTTGTTCCACCTATAGGGCTGCAG
ACCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCGTCTATTGGGGGCCCT
GTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG
CCCCGGCATAGTCTCACAAGAGACAGCTCTATCTGGTTCCTCTCAGCAAA
ATCTTGCTAGTGTATACAATACTGTCAGCATTTGGAAGCTGATTATGGGA
TGGATCCCCGGGTATGGCAGTCTCTAGATAGTCCATCCTTTTATCTCAGC
TCCAAACTTTGTCTN

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTATTCCAGCAAATACAAACCCCGGTGC
CAAGAGAGTAAAAAGGAAACATTATTTCCAGCCGTCGAGTCTGGGCTTTC
AGTTATGTCCACATGAAGGGGTTGGAATTGTTGTATACATCAGATAGTGA
TTAAAATAAAGGAAACTGGAAGCCTGGCTGTACTGTAAAGTCAGTGTCCA
GAGCTCTGTGACCGGGATCAACCCGTGTGACGTGATTGTGGATGTTCTGA
CGGTCTCCTCATGCCAGATGGGTGACGACCATGGCTGCTTTATCACAGCC
CGAGTTAAATGTTTTTACCCACCCCACACAGTGAGCTTTTCTTAAGGAGG
AGCTGCTTTGGGTAGAGCCAAGAAAAATAAATAAGTGTGGAGGAGGACTT
CAGTGCCTGAGAATGAAACTTGGGAAATTGTACATTTCAACTCCCTGAAG
AGTGTCCAAGTCCTCTTTTCCCGCTTAGAAAGGAACAGCACATAGTATAT
TTGTGGCAGCAAGTTTTCCTTTCCTCCTCTTCCTCCCCCTTCTCCTTTCT
CTTCTTTCTTCTCCTCTACCTCCTCTTCCTCCTCTTTCTGACTAGGGTCT
CTCTACAGAGCTCATGCTATCCTGGAATCTACTGTGTTCACCAGGCTGTG
CTCCAGTTCTCTCTGCCTCCTGAGTGCTGCCACTAAATGCTTGGGCCCTA
TTCACACTCATN

Query= MSMg01no295_i20.b1 MSMg01no295_i20.b1 CHROMAT_FILE:
MSMg01no295_i20.b1 PHD_FILE: MSMg01no295_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:31 2005
         (315 letters)



>mm_chr4_83461289_83462003
          Length = 715

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttcttttctccagtgagatagtaaatctgccccattcttactctgttacata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcacttcttttctccagtgagatagtaaatctgccccattcttactctgttacata 453

                                                                       
Query: 65  cacagcactgtgtcctcaggaaataccacacaatctccagggtctccatctcctcccttg 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 452 cacagcactgtgtcctcaggaaataccatacaatctccagggtctccatctcctcccttg 393

                                                                       
Query: 125 ttacataagataggaataaaagttcctctctgtctactcccaaaactgttaggaggccag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttacataagataggaataaaagttcctctctgtctactcccaaaactgttaggaggccag 333

                                                                       
Query: 185 acaactaaaatacctagtgattataacttattttctatagaaaggagctatagtacaagc 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ataactaaaatacctagtgattataacttattttctatagaaaggagctatagtacaagc 273

                                                                       
Query: 245 tttattatatttctttatagcaatcatacagggcagatacttttataaatctaatttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttattatatttctttatagcaatcatacagggcagatacttttataaatctaatttttc 213

                   
Query: 305 agggtaaa 312
           ||||||||
Sbjct: 212 agggtaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_i20.g1 MSMg01no295_i20.g1 CHROMAT_FILE:
MSMg01no295_i20.g1 PHD_FILE: MSMg01no295_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:31 2005
         (286 letters)



>mm_chr4_83305160_83305845
          Length = 686

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attattccagcaaatacaaaccccggtgccaagagagtaaaaaggaaacattatttccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attattccagcaaatacaaaccccggtgccaagagagtaaaaaggaaacattatttccag 260

                                                                       
Query: 61  ccgtcgagtctgggctttcagttatgtccacatgaaggggttggaattgttgtatacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgtcgagtctgggctttcagttatgtccacatgaaggggttggaattgttgtatacatc 320

                                                                       
Query: 121 agatagtgattaaaataaaggaaactggaagcctggctgtactgtaaagtcagtgtccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatagtgattaaaataaaggaaactggaagcctggctgtactgtaaagtcagtgtccag 380

                                                                       
Query: 181 agctctgtgaccgggatcaacccgtgtgacgtgattgtggatgttctgacggtctcctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctctgtgaccgggatcaacccgtgtgacgtgattgtggatgttctgacggtctcctca 440

                                                       
Query: 241 tgccagatgggtgacgaccatggctgctttatcacagcccgagt 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccagatgggtgacgaccatggctgctttatcacagcccgagt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)