Query= MSMg01no295_j05.b1 MSMg01no295_j05.b1 CHROMAT_FILE:
MSMg01no295_j05.b1 PHD_FILE: MSMg01no295_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:32 2005
(321 letters)
>mm_chr4_47013096_47013816
Length = 721
Score = 561 bits (290), Expect = e-164
Identities = 311/318 (97%)
Strand = Plus / Minus
Query: 4 ggaattctatatcttagaaagcatgtgaaaagatggtagggcatcggcgtggtccgaagg 63
|||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 353 ggaattctatatctcagaaagcacgtgaaaagacggtagggcatcggcgtggtccgaagg 294
Query: 64 actgattcacactgaaaccaactcccgtcatggtggcgttagtatgtgggatcttcaaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 actgattcacactgaaaccaactcccgtcatggtggcgttagtatgtgggatcttcaaac 234
Query: 124 agcgatgaagtttataaaagagccccttcagaaaaggcaccagctatgcagactggctct 183
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 233 agtaatgaagtttataaaagagccccttcagaaaaggcaccagctatgcagactggcact 174
Query: 184 ttctagtcatcagatatgctggtgccttgatcttggaattcctcatctccaaaactatga 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 173 ttctagtcatcagatatgctggagccttgatcttggaattcctcatctccaaaactatga 114
Query: 244 gttttgtttccaaactgcccactctgatgtattttattacaataacctaaatagaccaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gttttgtttccaaactgcccactctgatgtattttattacaataacctaaatagaccaag 54
Query: 304 accagtccaggctgaact 321
||||||||||||||||||
Sbjct: 53 accagtccaggctgaact 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_j05.g1 MSMg01no295_j05.g1 CHROMAT_FILE:
MSMg01no295_j05.g1 PHD_FILE: MSMg01no295_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:33 2005
(242 letters)
>mm_chr4_46974702_46975344
Length = 643
Score = 402 bits (208), Expect = e-117
Identities = 233/246 (94%), Gaps = 11/246 (4%)
Strand = Plus / Plus
Query: 2 tgtctctgaccccactatctccatagtgacaccagagttttta-----acatgctttttg 56
||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 202 tgtctctgaccccactatctccatagtgacaccagagtt---acagacacatgctttttg 258
Query: 57 gaggctggctttagtaa-tgctggggggggtctgaattcatgttcttgtttattttacct 115
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 259 gaggctggctttagtaaatgctgggggg--tctgaattcatgttcttgtttattttacct 316
Query: 116 aatgggccagctccccagcctggagatgaagattcaaagcatcagtgagtgattaattat 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aatgggccagctccccagcctggagatgaagattcaaagcatcagtgagtgattaattaa 376
Query: 176 tagccccatatcttagaaggtgggatgtgaattcttcttcgtcctaagatagcagacaga 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aagccccatatcttagaaggtgggatgtgaattcttcttcgtcctaagatagcagacaga 436
Query: 236 gggaga 241
||||||
Sbjct: 437 gggaga 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space: 147722
Effective search space used: 147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
