BAC Information

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BAC

Clone NameMSMg01-295J11
Chromosome4 (Build37)
Map Location 90,016,850 - 90,017,137
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664785, Dmrta1, Zfp352
Downstream geneLOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295J11.T7 (MSMg01no295_j11.b1)MSMg01-295J11.TJ (MSMg01no295_j11.g1)
ACCAG423443AG423444
length738739
length of high quality
(start - end)
288 (72 - 359)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no295_j11.b1 PHD_FILE: MSMg01no295_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:34 2005CHROMAT_FILE: MSMg01no295_j11.g1 PHD_FILE: MSMg01no295_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGTACTTTCTACCAGAAGATATTTTTATTAAACCATAGCTGTCA
TGAAGTTAAAATCTGCTCAGTCCCAGAACTTAATAAATGTAGAAATTGCA
TCCTGGGTATTTAATGAGAGCTAAATATTTTGATTTATAACCTCAAAGTT
ATATAGAATCTGAAGCTAATTCCTTTGGCCCAGCATTGCTGAATTTCTGC
ACTTTAGATTCTCTCAAAGAAGATTACAGTATATCCCACCAACGACTATG
GTAGTATTGATGGAATGATCCAAAGTGAAGTGTGCTCCTGCTGAGAGATA
CGGAAATGGCTTCATGATTTTCCGCCCCTCCGCTATGTGATTCAATCACC
TACTGAATTCTTTTCCCCCCCCCCATTAAAAATAAAGAATTTAACTCATT
TACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACT
CCCCTGTCCACCCACTCCCCCTTTTTGGTCCTGGTGTTCCCCTGTACTGT
GGCATATAAAGTTTGCAAGTCCTATGGGCCTCTCTTTCCAGTGATGGCCG
ACTAGGTCATCTTTTGATATATATGTATCTAGAGTCCTGAGTTCCGTTGT
ATTGTTTACTTCATAAAGTTGGTCCACCTATAGGCTTTCCCATCCCTGTT
GCTCCTTTGCATTCTTTCTCTTGCTCCCTCCATTGTTA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTGGTTTCTCCATCTAGATAGTTTTGTT
GGGTATTGTATCCTGGGCTGGCATTTGTGCTCTCTTAGGGTATGTATGAC
ATCTGCCTAGGATCTTCTGGCTTTCATAGTCTCTGGGGAGAAGTCAGGTG
TAATTCTGATAGGTATGACTTTATATATTACTTGTACCTTTTTCCTTTAC
TGCTTTTAATATTCTTTCTTGTTTTTTTCCATTTGGTGTTTTGATTATTA
TATGACAGGAGGAATTTCTTCCTCTGGTCCAAACTATGTGGAGTTCTCTA
GGCTTCTTATTTTTTCTTGCTCCCCCCCCCCTTTAGGTTAGAGAAGATTT
CTTCTATAATTCCCCCCCCCATATATAATAGACCTTTAAGTTGGAATTCT
TCCCTCTCATCTCTACCTGTTATCCTCATGTTCGGTTTTCTCATTGTGTA
CTGGATTTCCTGGAAGTTTCGCCTTATGATCCTTTTGCTCCTTGCGCTTT
CCTCGATTGTCGTGTACTCGCCTTCCATGGTATCTTTAGCTTCTGAGACT
CGCTCCTAAATCTCTTTGTATTTCGTTGGCGTATCTTGCCACCATTACCC
CTGTACCTTTCTTTTCGTTACTCCCCTATTTACGGCTTTTCTCCTTTCCG
ATTTTTTTAATCGCTCCATAGCTTTATAAATAAAACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_j11.b1 MSMg01no295_j11.b1 CHROMAT_FILE:
MSMg01no295_j11.b1 PHD_FILE: MSMg01no295_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:34 2005
         (288 letters)



>mm_chr4_90016650_90017337
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatatttttattaaaccatagctgtcatgaagttaaaatctgctcagtcccagaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 488 aagatatttttattaaaccatagctgtcatgaagttaaaatctgcacagtcccagaactt 429

                                                                       
Query: 61  aataaatgtagaaattgcatcctgggtatttaatgagagctaaatattttgatttataac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 428 aataaatgtagaaattgcatcctgggtatttaatgagagctaaatattttgacttataac 369

                                                                       
Query: 121 ctcaaagttatatagaatctgaagctaattcctttggcccagcattgctgaatttctgca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 368 ctcaaagttatatagaatctgaagctaattcctttggcccagcattgctgtatttctgca 309

                                                                       
Query: 181 ctttagattctctcaaagaagattacagtatatcccaccaacgactatggtagtattgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctttagattctctcaaagaagattacagtatatcccaccaacgactatggtagtattgat 249

                                                           
Query: 241 ggaatgatccaaagtgaagtgtgctcctgctgagagatacggaaatgg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggaatgatccaaagtgaagtgtgctcctgctgagagatacggaaatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)