BAC Information

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BAC

Clone NameMSMg01-295K14
Chromosome4 (Build37)
Map Location 11,503,878 - 11,504,162
singlet/doubletsinglet
Overlap geneE130016E03Rik
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847
Downstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295K14.T7 (MSMg01no295_k14.b1)MSMg01-295K14.TJ (MSMg01no295_k14.g1)
ACCAG423492AG423493
length749748
length of high quality
(start - end)
320 (46 - 365)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no295_k14.b1 PHD_FILE: MSMg01no295_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:39 2005CHROMAT_FILE: MSMg01no295_k14.g1 PHD_FILE: MSMg01no295_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACAAAACCAGAGACTCTGAAACTTATAGAGGAGAAAGTGAGG
GAAAGCCTTGAAGATATGGACACAGGGGAAAATTCCTGAACAGAACAGCA
ATGGCTTGTGCTTTAAGATTGAGAATCGACAAATGGAACCTCATAAAATT
GCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCAC
CAACAGATTGGGAAAGAATCTTTACCAATCCTAAATCTAATAGGGGACTA
ATATCCAATATATATAAAGAACTAAAGAAGGTGGACTACAGAAAATCAAA
TAACCCTATTTATTAATGGGCCTCACCACCTAAACAAAGAATTCTCACCT
GAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCAGGAAAATGTAAATCAAAACAACCTTGAGATTCCACCTCACAC
CAGACAGAATGGCTAAGATCAAAAACTCAGATGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGAATTGCAAGCT
GGTACAACCACTCTGGAAATCAGTTTGGCGGTTCCTCAGAAAATTGGGCA
CAGTACTACCAGAAGATCCAGCAATACCTCTCCTGGGCATGTAACCAGAA
GATGCCCCAACTGGTAATAAGGACACATGCTCCACTATGTTCATAGCAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTCTGAGATTGCCCTTTATTTCA
CAGAACTCAGAGGTAATTACTGTACTTTAGGAGTATCTGTGTTGGCTCCC
AAGTATCAGCACAATAGGAATTACAGACTATATATTTTTGTCTAATGCAT
TCTTTTAAAATGTACTATGTTAATATTTAGAAATCTGCTTTCCTTTTCTT
TTTGAGTGTGTACATTCCATGCTGTACATTCATATTTACTTAGGGAACCT
GTGCGTGTGGCTGCATGTGTACAGAGGTTAGAATTGGTGTTCTGTCTTCT
TCCATTATTGTTTTTTGCTCCCCCCCCCCGAGACAAGGTCTCTGACTAAA
CCTGGAATTCTCAGATTGGGATAAAAAAAAATAGCCAGTTGGGGGGGGAA
TCCCCTGTCTTTACTTCCTGAATTTAGGGATTAGAGGCAGGTTGCCATGC
CTATCCAGTTTCTTGTTTTGTTTTGCTTTTACAGACAAAATTTCTTTATG
TAGCCCTTGGCTGCCCTGCACCTGCCCTCAAACTCATGGATACCCGCCTG
TCTCCGCTAGGATTAAAAGCTTGCTTATTCGCTTGTTGCCCACCCGATTC
CTGTCCCACATGCTTCAATGATCCCCCTTCTCATTGCCCCACTTTTTTTC
TCTAGCTTCATGCTCCCCCTTTTTGCTCCCCCCCCTTTTTCCCCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_k14.g1 MSMg01no295_k14.g1 CHROMAT_FILE:
MSMg01no295_k14.g1 PHD_FILE: MSMg01no295_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:39 2005
         (285 letters)



>mm_chr4_11503678_11504362
          Length = 685

 Score =  497 bits (257), Expect = e-145
 Identities = 278/285 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttctgagattgccctttatttcacagaactcagaggtaattactgtactttaggagta 60
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 201 tgttctgagattgccctttatttcacagaactcataggtaagtactgtactttaggagta 260

                                                                       
Query: 61  tctgtgttggctcccaagtatcagcacaataggaattacagactatatatttttgtctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgttggctcccaagtatcagcacaataggaattacagactatatatttttgtctaa 320

                                                                       
Query: 121 tgcattcttttaaaatgtactatgttaatatttagaaatctgctttccttttctttttga 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tgcattctttttaaatgtactatgttaatatttagaaatctgctttccttttctttttgc 380

                                                                       
Query: 181 gtgtgtacattccatgctgtacattcatatttacttagggaacctgtgcgtgtggctgca 240
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 381 gtgtgtacattccatgctgtacattcatatttacttagggaacctgtgtgtgtgcctgca 440

                                                        
Query: 241 tgtgtacagaggttagaattggtgttctgtcttcttccattattg 285
           |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tgtgtacagaggttagaattggtggtctgtcttcttccattattg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)