BAC Information

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BAC

Clone NameMSMg01-295L13
Chromosome4 (Build37)
Map Location 25,557,313 - 25,733,640
singlet/doubletdoublet
Overlap geneFut9, LOC100040780
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneHn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L13.T7 (MSMg01no295_l13.b1)MSMg01-295L13.TJ (MSMg01no295_l13.g1)
ACCAG423536AG423537
length736732
length of high quality
(start - end)		318 (45 - 362)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no295_l13.b1 PHD_FILE: MSMg01no295_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:44 2005CHROMAT_FILE: MSMg01no295_l13.g1 PHD_FILE: MSMg01no295_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,557,313 - 25,557,624)(25,733,391 - 25,733,640)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGTGCAGATATGTGACACTCCAACCTCTAGACACGGGATACTTTTTG
GTTCAGGCTTCTTCATTGTACCGGTGTTTAAGATGAAGTTTAAAGCAGAC
TTATAAGACATAAACAGGTCCTGATGATGGGGTCCTGTCAGCACCTTTAA
CCTCATTTTTGCCACTGATGCTTTCTTTGCATGTTTTTGCTCGTCCCTGC
GGTACACCAGTTCTCATCTCTGCCTGTGAGATGAGGGTTTCCTACTTCTA
CTTTGAGTTACTGCTCTGCAGGCTTGGTTTCTCAGTTCTACCAGAAGGTT
CTTAGAGAAGCGATTCCTAATGACCTTCCCCAACATACTGCGGCCAAACA
AACTAATAAGGTCTGCCCCAAGGAGACTCCTTCAGAGTGCCTAAGTACAA
GTTTTTTTTTTCTAATTCCTCTTTTACCACATAATGTACTATGGACATGC
TATAATGGCATTAATAAATTACCTAATTAATTAATAATAACAGCTCTGGG
ACTTGAACTTAGGCCTTCGTGGTCTATCACTAAGCTATATCCCAAGTACT
CATTTTGCTTTTAAAGACAAGATCTCTTTAGACTGCCCAGGCTAGCTTCA
AGCTCATTCTCTTGTCCAGGCATTTTGCTTCAGTTTATCAGCTAGCAGGG
ATTATAAACATGTGACACCAAACCTAATCTTCATCN

TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTATTGGAGAAATAAACAGAA
CTCTTTTTTGTGATTAAATCTAGAAATATTTATTTTCCCATTGTATAGAA
ATAAAGAAACATATATATTTATTGATATGGACAATATTATTACTTTTAAT
TATTTCAATTCTTTTATGCTGCTTTTATTCCTTATAGCTCTGAATTTTCT
TTTCAGTGTAGTTTATTTTCTATTATTATTTCTTTATATATATTTTAAAT
TAATGAAACTTTTATTTTTTACTTTATAGGTTAGTTTACTAAAATAATCA
CCGATAAACATCAAGTGTTTGGTTCCGCCCACACAAATTGGAACTGGGCA
AGTCACTAAAATACTTGTCACCCATATTTAAATAACAGTTCAGATTCTTA
GCACCCATATAACATACCTGTGTAGCTTGTACTTGTGATCCCAGCACCCT
GAGGTGAGGGGCTCTGAGGATCCCAGGGATATGATTGACTGCTATTCTAG
CTGAGCATCAGAGCTTCAGGCTCAGTGGGAGACCATATCTCAAAAATAAG
GTGGAGAGAGACTGAAGAAATATATGACATTGGCCTATAGCCTACACACT
CATACACATAATCTTGAATGTTCGTTCATACACATACATGCACACCATAC
ACTAATATGTTGGAAAATTGTTACACACCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l13.b1 MSMg01no295_l13.b1 CHROMAT_FILE:
MSMg01no295_l13.b1 PHD_FILE: MSMg01no295_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:44 2005
         (318 letters)



>mm_chr4_25557109_25557826
          Length = 718

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgtgcagatatgtgacactccaacctctagacacgggatactttttggttcaggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgtgcagatatgtgacactccaacctctagacacgggatactttttggttcaggc 264

                                                                       
Query: 65  ttcttcattgtaccggtgtttaagatgaagtttaaagcagacttataagacataaacagg 124
           ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcttcattctaatggtgtttaagatgaagtttaaagcagacttataagacataaacagg 324

                                                                       
Query: 125 tcctgatgatggggtcctgtcagcacctttaacctcatttttgccactgatgctttcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcctgatgatggggtcctgtcagcacctttaacctcatttttgccactgatgctttcttt 384

                                                                       
Query: 185 gcatgtttttgctcgtccctgcggtacaccagttctcatctctgcctgtgagatgagggt 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatgtttttgctcgtccctccggtacaccagttctcatctctgcctgtgagatgagggt 444

                                                                       
Query: 245 ttcctacttctactttgagttactgctctgcaggcttggtttctcagttctaccagaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcctacttctactttgagttactgctctgcaggcttggtttctcagttctaccagaagg 504

                       
Query: 305 ttcttagagaag 316
           ||||||||||||
Sbjct: 505 ttcttagagaag 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_l13.g1 MSMg01no295_l13.g1 CHROMAT_FILE:
MSMg01no295_l13.g1 PHD_FILE: MSMg01no295_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:44 2005
         (286 letters)



>mm_chr4_25733257_25733942
          Length = 686

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttattggagaaataaacagaactcttttttgtgattaaatctagaaatatttattttc 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttattagagaaataaacagaactcttttttgtgattaaatctagaaatatttattttc 325

                                                                       
Query: 61  ccattgtatagaaataaagaaacatatatatttattgatatggacaatattattactttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccattgtatagaaataaagaaacatatatatttattgatatggacaatattattactttt 265

                                                                       
Query: 121 aattatttcaattcttttatgctgcttttattccttatagctctgaattttcttttcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattatttcaattcttttatgctgcttttattccttatagctctgaattttcttttcagt 205

                                                                       
Query: 181 gtagtttattttctattattatttctttatatatattttaaattaatgaaacttttattt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 gtagtttattttctattattatttctttatatatattttaaatttatgaaacttttattt 145

                     
Query: 241 tttactttat 250
           ||||||||||
Sbjct: 144 tttactttat 135


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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