Query= MSMg01no295_o03.b1 MSMg01no295_o03.b1 CHROMAT_FILE:
MSMg01no295_o03.b1 PHD_FILE: MSMg01no295_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:56 2005
(701 letters)
>mm_chr4_12220627_12221727
Length = 1101
Score = 922 bits (477), Expect = 0.0
Identities = 492/497 (98%)
Strand = Plus / Minus
Query: 5 gaattccataagtgaaagaaatcacatgaagaacatagtagatatgtcttactccacaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaattccataagtgaaagaaatcacatgaagaacatagtagatatgtcttactccacaca 438
Query: 65 tttaggttttaagaagtaccttgcttatgttccttaaatcaaattaaatatggctttagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttaggttttaagaagtaccttgcttatgttccttaaatcaaattaaatatggctttagg 378
Query: 125 cccattttacataataggattttattctcagtatgtttgctactgaatatcctctctatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cccattttacataataggattttattctcagtatgtttgctactgaatatcctctctatg 318
Query: 185 agaagacataactccatgggtctctcttacgttctcttcatcataagagttacctgtaag 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 317 agaagacataactccatgggtctctcttacattctcttcatcataagagttacctgtaag 258
Query: 245 ttaggtaatgccataggtgttaactattcttgcctactctgtgttctagactgttataca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttaggtaatgccataggtgttaactattcttgcctactctgtgttctagactgttataca 198
Query: 305 gaatggagggtcccagagctcaggcttcctctctatgatacaacccactgcatgtctatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 197 gaatggagggtcccagagctcaggcttcctctctatgatacaacccactgcatgtctttg 138
Query: 365 gatcatctggccctcttcacatcaactcatgggcactgtagcaatgaagctgaggtggtc 424
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 137 gatcatctggccctcttcacatcaactcatgggcactgtagaaatgaagctgaggtggtc 78
Query: 425 tgggtatgtctatagctgtgaataaaggattactttttgcttctgacctagggatcttat 484
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 77 tgggtacgtctatagctgtgaataaaggattactctttgcttctgacctagggatcttat 18
Query: 485 atctgccccattcgtaa 501
|||||||||||||||||
Sbjct: 17 atctgccccattcgtaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_o03.g1 MSMg01no295_o03.g1 CHROMAT_FILE:
MSMg01no295_o03.g1 PHD_FILE: MSMg01no295_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:56 2005
(662 letters)
>mm_chr4_12055541_12056600
Length = 1060
Score = 1125 bits (582), Expect = 0.0
Identities = 655/714 (91%), Gaps = 54/714 (7%)
Strand = Plus / Plus
Query: 1 cagaagattaagacagggagatctccgagttcaaggtcatctgggattaaaggtgtggtg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cagaagattaagacagggagatctccgagttcaaggtcatctgggattaaaggtgtggtt 208
Query: 61 gcacacacctttaatctgggttacacctgctggagaccatataaagacattggaagaagg 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gcacacacctttaatctgggctacacctgctggagaccatataaagacattggaagaagg 268
Query: 121 a----------------------------------------------------aggaagg 128
| |||||||
Sbjct: 269 aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagggaggaagg 328
Query: 129 aaggctctatctccttcgactgcttgccatgttgtactgagcaactgctacatccttggt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaggctctatctccttcgactgcttgccatgttgtactgagcaactgctacatccttggt 388
Query: 189 cttcattcacagctgctgctgaccattgttatggagttggactgcagactgtaagtcatt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cttcattcacagctgctgctgaccattgttatggagttggactgcagactgtaagtcatt 448
Query: 249 aacaaattcctttactctatagagactagtcataagttctgtgactctagagaaccctga 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 449 aacaaattcctttactctatagagactagtcataagttctgtgactctagagaatcctga 508
Query: 309 ctaatacagtccccaacaaaggaaataagatatgtttttacattatttaaattccactga 368
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 509 ctaatacagtccccaacaaaggaaatacgatatgtttttacattatttaaattccactga 568
Query: 369 gggtacgggttgtttcggttccttagcttgagttttaacaaagcaatacagaaaaaacac 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gggtacgggttgtttcggttccttagcttgagttttaacaaagcaatacagaaaaaacac 628
Query: 429 tcactgattttatatgcaatacaagaatatctttatggcaaatgattttcccattagatc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcactgattttatatgcaatacaagaatatctttatggcaaatgattttcccattagatc 688
Query: 489 ttgtttttctactttcctagtttgttcatagacccccccatgtgtataaactcatctcac 548
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 689 ttgtttttctactttcttagtttgttcatagaccccc--atgtgtataaactcatctcac 746
Query: 549 ttggtttgaaaagcacatttgcacatatatgaatgttatcttttaaagtaaacaccctta 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttggtttgaaaagcacatttgcacatatatgaatgttatcttttaaagtaaacaccctta 806
Query: 609 cagacagcacaaacattttggcatgacagtcatagctaatgtatggcttccagg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 cagacagcacaaacattttggcatgacagtcatagctaatgtatggcttccagg 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1060
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1050
Effective search space: 684600
Effective search space used: 684600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
