BAC Information

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BAC

Clone NameMSMg01-296I05
Chromosome4 (Build37)
Map Location 53,274,550 - 53,274,887
singlet/doubletsinglet
Overlap geneAI427809
Upstream geneLOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik
Downstream geneLOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296I05.T7 (MSMg01no296_i05.b1)MSMg01-296I05.TJ (MSMg01no296_i05.g1)
ACCAG424105AG424106
length715786
length of high quality
(start - end)
49 (429 - 477)343 (77 - 419)
definitionCHROMAT_FILE: MSMg01no296_i05.b1 PHD_FILE: MSMg01no296_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:43 2005CHROMAT_FILE: MSMg01no296_i05.g1 PHD_FILE: MSMg01no296_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCGGGGCCTGTTTCGGACCCCGAANGACCNANAGATGTTACGNGAGGGG
GCGGGANGNAGAGAGANNGGAGGGNAAGGGNAGAGGGTTTTTCCCCGAAA
AAGGAGGGGAAGGNNAGGAGANNAGNCNGGAAGAGNAGNGCANAGAGNAG
GAAGNGACACGGGNGGNGAAAGGNAAGGNAGGGGANAGAAGGGAGGGGGA
GGAGAGGNGNCAGNNAAGGGAAGTTTTTTAAGNATCANAGATGGNCTCAG
GATAGGATTGAAGTTGGTCCTCAACTGTGCAACAGGGGATTTTATGTTTG
TCACCCGCGCACAGAGCACAGGAAGAGACACATTTTTTTTTCCCCCCCCC
CCCCCCACAGATCTCTCAAGTCCTTCTGAGCTGGCAGCGCCCCCATGAAA
CAAAAACAAGATGGTTGGGGCGCTCCCACCCTTGTCAGCTTCTTGATGGA
CAGCTGCCCCTGAGCTCTATGCCAGCTGCAGCTAGATGTGCACAGAATAC
TTCCTTACTGGACTGATGGTTGGCGGCTTGTGACCTCCCACAGAGAGTGA
GATTGCCCCAGCCCCTGTGCCCTCCCCCCGAACGGACCCGCTTGGTACCA
CACTTTCTATCTATTATACATTTCCTTTTTTTTTTTTTTCCGCAGGGATC
GCTGGATACTGCCCTGATGCCCGGTGCACTTCAGGCATAACCTTGCCGCT
TCTCCGAATTTCGAG
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGATGCCAGATAGATTGGAGG
GCAAGGGCAGAGTGTTCACACCCTGGCAGAGGAATCACAAGGCCAGGAGA
CTAGCCTTGAAGAGCAGCTCACTGATTAGGAAGCTACACGGGCTGCGAAA
GGCAAGGCAGGTGACAGACTGGTGTGGGAGGTGAGGTGCCAGTAAGCTGA
TGGACCATAAGCATCACAGATGGCCTCAGGATAGGCTTGCAGCTGGCCCT
CAACTGTGCAACAGGGGATGACACGGTCGTCTCCTGCGGATAGAGTACAG
GAAGAGACACAGGCAGGTGTTGGGGGGCCAGTAGCACAGATCTCTCAAGT
CCTTCTGAGCTGGCAGTGACTCGATGGGACAGTGACATGGTGTTTGCACC
TCTCCCACCCTTGTCAGCTTCTTGATGGACAGCTGCCCCTGAGCTCTATG
CCAGCTGCAGCTAGATGTGTACAGAATACTTCCTTACTGGACTGATGGCT
GGTGGCTTGTGACCTCCCACAGAGAGTGAGACTGCAGCAGCAGCTGGGCC
TTCAGCCAGATAGGACACAAATGGGACAAAACCATCAAACTAACTATCAA
CCAAACAGGTTGCAAACATTGAGGGTATCTGTGGACCCGCCAGATGCTTG
TGTGTATTCCAGGCCACTTCCTTGCCCCCTCGTCTGATTTGGAGAATTGG
CGTATCCCACTTACTTTCGATACCGAATCATGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_i05.g1 MSMg01no296_i05.g1 CHROMAT_FILE:
MSMg01no296_i05.g1 PHD_FILE: MSMg01no296_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:43 2005
         (343 letters)



>mm_chr4_53274346_53275087
          Length = 742

 Score =  603 bits (312), Expect = e-177
 Identities = 333/340 (97%), Gaps = 3/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gatgccagatagattggagggcaagggcagagtgttcacaccctggcagaggaatcacaa 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gatgccagatagattggagggcaagggcagagtgttcacaccctgggagaggaatcacaa 264

                                                                       
Query: 65  ggccaggagactagccttgaagagcagctcactgattaggaagctacacgggctgcgaaa 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 ggccaggagactagccttgaagagcagctcactgattagggagctacacgggctgcgaaa 324

                                                                       
Query: 125 ggcaaggcaggtgacagactggtgtgggaggtgaggtgccagtaagctgatggaccataa 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 ggcaaggcaggtgacagactggtgtgggaggtgag-tgccagtaagctgatggaccataa 383

                                                                       
Query: 185 gcatcacagatggcctcaggataggcttgcagctggccctcaactgtgcaacaggggatg 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcatcacaggtggcctcaggataggcttgcagctggccctcaactgtgcaacaggggatg 443

                                                                       
Query: 245 acacggtc-gtctcctgcggatagagtacaggaagagacacaggcaggtgttggggggcc 303
           ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acatgg-ctgtctcctgcggatagagtacaggaagagacacaggcaggtgttggggggcc 502

                                                   
Query: 304 agtagcacagatctctcaagtccttctgagctggcagtga 343
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agtagcacagatctctcaagtccttctgagctggcagtga 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 742
Length adjustment: 9
Effective length of query: 334
Effective length of database: 733
Effective search space:   244822
Effective search space used:   244822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)