BAC Information

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BAC

Clone NameMSMg01-296J15
Chromosome4 (Build37)
Map Location 59,243,777 - 59,243,948
singlet/doubletsinglet
Overlap genenone
Upstream geneMusk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg
Downstream geneLOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296J15.T7 (MSMg01no296_j15.b1)MSMg01-296J15.TJ (MSMg01no296_j15.g1)
ACCAG424168AG424169
length751819
length of high quality
(start - end)
315 (46 - 360)172 (77 - 248)
definitionCHROMAT_FILE: MSMg01no296_j15.b1 PHD_FILE: MSMg01no296_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:50 2005CHROMAT_FILE: MSMg01no296_j15.g1 PHD_FILE: MSMg01no296_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTAAAGCGCTGTTGCTAATAGGTTATAATGAGTCATAGCCTTG
GAGAAAGGGCTAAATACAAAAATATATTTAAAAATTCTTATAAATTAATA
TTAAAAAACCTAATTAAAAAGTTGGCAAAAGATTTGAACATCACACACAC
ACACACACACACCCTACAATATAGATGAATCATGATGGTAAATTAAATCA
GTCAGTCACCACAGACCAATATTTGACAATTTTCATTTATACAGTATATT
TAAGAGAGGCAATTTCATAGAGACAGAGTACAAATTATTCTACAGCTGGC
CAAAACAGAGATTGTCTGCTATGCCACTTGACAGGAGTTAGTAAGTGTTG
GGAAATTGTGTGTGCGCACAACCTTGATTTTATCAAGGCCTATCGACTGA
TACTTTAAATTGCATGATAAATTCTATTACAATAAGTCTTGCCCTCCAAG
TATGTAAAGATATTCATGACTATTAGGCATTGGGGAAATATAGAATAAAG
CCATAGTGGGCATTGCACATGCCCATAGAATAGCTGCTACCATGTTTATA
AGGATACAGAGTAACTGAAATTCATATATGGCTGATGGGTATGTAAAATG
ACGAATTTTGGAAAAAATTAATAATTTTATTACAAAATCAAATATATACC
TAAAACACCAATAATAACAATAAACAATTTTACTTCTGTATATTCTCTCA
A
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGGCTGGGCAGGTACAGGCC
TGCTGGCCTGAATCAGCAGGACTGTGCAGGGCAGAATGCCTACCCCTCCA
TTCTGCAGCTTCCGGTCAGTTGTCAAAGACAGAGCAGCCATACTTTTCTC
CCTATGTTTTTTTTTTTTCTTTTTTTGGGGTGGGGGGAGGTTTGAGACAG
GGTTTCTCTGTGTATTCCTGCTTGTCCTGTAACTCCCTTTGTTTTACAGG
CTGGTCTCTAATTCACATCTTTTTTTGCCCCGGCTTCTTTCGTGCAGAGA
TTAAAGTTTTTTGTGAATTTTCCNAAACANAGCCCCGTTTTTATGAATAT
AGGTATGAGGAGGCACCCCCTTAAAAAAAAAAAAAAAAAACGGGGGGGGG
GGGGGGGTGCTCCCCCATTTATATCTCCTATTTTATTGTGCCCTAAATTT
TTATCTTAATATCTCTCATAATTAAATTGTATCCCCTGTTTATTCCCGCC
TTTTTTGTCCTCCAATTATATTTTATAGCTTTGTTTGTTCGTACTTTTTC
TGTACACTCAATTTTTTCAATACCGTATTTCTCGCTCAAAAGTTTCGCCG
CATAAAGCTTTGTTATTATTCCCTATTTATATCCCTATCGCCGATGCCCA
GATTTATCTTGCATGCTTCCGTCGTCCGCGTTCTTATTATTATTTTTATT
TCTTTTTTTAAGCGCAGTTATTATTGTTCTGCCCTCCCTTGCGTGCTACG
TTTTATGTATTTATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_j15.g1 MSMg01no296_j15.g1 CHROMAT_FILE:
MSMg01no296_j15.g1 PHD_FILE: MSMg01no296_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:50 2005
         (172 letters)



>mm_chr4_59243577_59244148
          Length = 572

 Score =  319 bits (165), Expect = 5e-92
 Identities = 171/173 (98%), Gaps = 2/173 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagggctgggcaggtacaggcctgctggcctgaatcagcaggactgtgcagggcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 accagggctgggcaggtacaggcctgctggcctgaatcagcaggactgtgcagggcagaa 313

                                                                       
Query: 61  tgcctacccctccattctgcagcttccggtcagttgtcaaagacagagcagccatacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgcctacccctccattctgcagcttccggtcagttgtcaaagacagagcagccatacttt 253

                                                                
Query: 121 tctccctatgtttttttttttt-ctttttttggggtggggggaggtttgagac 172
           |||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 252 tctccctatgtttttttttttttctttttttggggtggggg-aggtttgagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)