CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATGTATTCCTAAAATGACCTTGTACTCTTGGAACTCTTTTTAAA
CTTGGAGCCACAGATTTGATCGCTTTCTCCTATCCTTTCTCTGTCCCAGT
GTTGAAGTTAATCCTCTCTTATAACTATGGTTCATAATAGATAGATTGCA
TAAAAATCGAGTGTTGCATATTTGCTCACAGTTTCTAATAGGTCTAGATC
ACAGTTCCTTTTAGTCAACACAGCTAGAACATGTGCATATAAGTATACTT
ATGTCCAAATATATTTCTGTATCTGTCTATAAATATATAGTTAAGATGCA
TTAAGTCATAATTACCATTTATTTCTTACAGCACATTCTTCTCTGCCCAA
ATCTGACATTATTAACCGAAATTTATGAAATATGATCCTCAAATTCTATG
ATGTATAAAAGTTCAATTTCAAAAGTTAATCTCTCTTCCCAAGTCCTTAG
AGAAACACTCTCTAACCCTTACCAGGATCTAAAATATGCTTAAATCTTTT
ATACTCAGAACTCACTCTTCCAGAAGAATGAAACAGATTATATGTTCACA
TTTGAGAAAATAATAATTTATATTACTTTCTAATATAAATTCATTTTTTA
GTTATGTGTACATGTGTGTGGAGTTAGAGGCCATCACAGGGTCTAGGATT
CCCTGCAGGTGGATTTACAAGTGTTAGCTGTCTCAAA

GTTTTGTNTTGCCCCCNNNTCTATNCTTTTTTTNNNAAGGCNNNNNNNNC
TTTCCATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTGACGGTTTCAAGTTTAT
GAAGAGAAGTGAGATCTCCAAGCAAAACCATGGAGGCAGAAACTGAAAAA
GATATAGTGAAGGACCACAGCTTACTAGCTTGATTTCCTCTGCTTGCTTA
GAGTGCCTTCTGATATTTCCTGGGAGCATCTGCTCATGAGTGGCACAAGC
TATAGTTGCTTGTGCCTTCCATATCAATCAGTAATGCAAAATATGTCCTT
AGACTTCCCTATAGGCCAGTCTGGTGGGGGATATTTTATCCATTGTGGTT
CTTCTTTGCCTGTGNTTCATTATCGCCANACATCCCTAACAAACAATCCA
GAACCAGATCCAGTTTTGTAACATGTATAAATAAAAATGAATATACGTAC
AGATGCAAAACATGTATATATGGTAAAATTATCAGTGGAGTGAATTCTAT
ATCTGAAGTGAAATATAGTGATTCATTCATGGTGGGCGATAGAATAGTCT
TGTGGAAACCGTTTAGATTTTAGAATGAAGGGAAAAAAAAAACCAATTTC
TGCCTGGTTAGCTTATTCTACCAGTTTTCAACATGACCAATTCTGAATGA
AAACACATCCATCATTTTAATATTTTCATTACTAGGCAGTTATAATTCAT
GTTTATTGCCACTTTTCAATCTAGAAATTACAAAATCTAAATTTA

Query= MSMg01no296_p18.b1 MSMg01no296_p18.b1 CHROMAT_FILE:
MSMg01no296_p18.b1 PHD_FILE: MSMg01no296_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:19 2005
         (614 letters)



>mm_chr4_18071603_18072616
          Length = 1014

 Score = 1149 bits (594), Expect = 0.0
 Identities = 610/616 (99%), Gaps = 2/616 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctcctatcctttctctgtcccagtgttgaagttaatcctctcttataactatggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttctcctatcctttctctgtcccagtgttgaagttaatcctctcttataactatggttc 624

                                                                       
Query: 61  ataatagatagattgcataaaaatcgagtgttgcatatttgctcacagtttctaataggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ataatagatagattgcataaaaatcgagtgttgcatatttgctcacagtttctaataggt 564

                                                                       
Query: 121 ctagatcacagttccttttagtcaacacagctagaacatgtgcatataagtatacttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 563 ctagatcacagttccttttagtcaacacagctagaacatgtgcatataagtatgcttatg 504

                                                                       
Query: 181 tccaaatatatttctgtatctgtctataaatatatagttaagatgcattaagtcataatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tccaaatatatttctgtatctgtctataaatatatagttaagatgcattaagtcataatt 444

                                                                       
Query: 241 accatttatttcttacagcacattcttctctgcccaaatctgacattattaaccgaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 443 accatttatttcttacagcacattcttctctgcccaaatctgacattattaagtgaaatt 384

                                                                       
Query: 301 tatgaaatatgatcctcaaattctatgatgtataaaagttcaatttcaaaagttaatctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatgaaatatgatcctcaaattctatgatgtataaaagttcaatttcaaaagttaatctc 324

                                                                       
Query: 361 tcttcccaagtccttagagaaacactctctaacccttaccaggatctaaaatatgcttaa 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 323 tcttcccaagtccttagagaaacactctctaacccttaccagcatctaaaatatgcttaa 264

                                                                       
Query: 421 atcttttatactcagaactcactcttccagaagaatgaaacagattatatgttcacattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcttttatactcagaactcactcttccagaagaatgaaacagattatatgttcacattt 204

                                                                       
Query: 481 gagaaaataata--atttatattactttctaatataaattcattttttagttatgtgtac 538
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gagaaaataataagatttatattactttctaatataaattcattttttagttatgtgtac 144

                                                                       
Query: 539 atgtgtgtggagttagaggccatcacagggtctaggattccctgcaggtggatttacaag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atgtgtgtggagttagaggccatcacagggtctaggattccctgcaggtggatttacaag 84

                           
Query: 599 tgttagctgtctcaaa 614
           ||||||||||||||||
Sbjct: 83  tgttagctgtctcaaa 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)