BAC Information

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BAC

Clone NameMSMg01-297B14
Chromosome4 (Build37)
Map Location 13,998,138 - 13,998,384
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039988, Runx1t1
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297B14.T7 (MSMg01no297_b14.b1)MSMg01-297B14.TJ (MSMg01no297_b14.g1)
ACCAG424528AG424529
length763800
length of high quality
(start - end)		715 (47 - 761)249 (74 - 322)
definitionCHROMAT_FILE: MSMg01no297_b14.b1 PHD_FILE: MSMg01no297_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:27 2005CHROMAT_FILE: MSMg01no297_b14.g1 PHD_FILE: MSMg01no297_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAGAGCGCGG
AATTCCAACTCAATGGCCCAGAAAATATTTTCAACAGAATGATAGAAGAA
AATTGTCCTAACCTAAAAAGGAGAGGCCTATAAAAGTACAAGAAGCTTAC
AGAACACCACAATAAATTGGATCAGAAAAGAAACTACTCTTACTATATAA
TAAATCAGTAAATATATAGAACAAAGAAAGTGTATTAAAAGCACATAGGA
AAAAGACAGAGTAGCATACATTCAAATTCCCAATGGAAACTCTAAGGATC
AGGAAGGTTTGAATAGATGTGTTGCAATCTAAGAGACCACAGATGCTAAC
TCAGATTATTATACCCATCAAAATCTTCAATCACTATAGATAAGGAAAAC
AAGATGTTCTATGATAAAGCTGAACTGAAATGATATCTATCATCTGTATG
CCCAGCCATACAGAAGGTGATAGAAGGAAAATTCCAAACTAAACAGGTTA
AATACTCACACAAATACAGGGAAAATAATTATAATAGCGTATCAGGAAAA
CCAAAATAAGGGAAACACACACACATATACTCATGCCCTATCACCACCAC
CACCACCACCACTAACAACAACAACAACAACAAAACAGGAATTAATTATT
ATTGGTCATTGGTAACTCTCAATGTCAATGGCCTCAATAAAAAGACACAG
ATTAACAGAATGGATATGTAACGGGTTCATCCTCCTGTTACATACAAGAA
ACACACCTGAATA

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGCCTTCCTGCCATTATCATTAAGTA
CACATATTCTTGAACAGAGGTAATGGAAATATGTCTTCTATTTTGAGATA
ACCATGAGAAACTCAAACCGTTGACCTTTCTTTCTCTGCCCTCCAACCTC
TCCTGTGTCCTCTTTTTCCAACCTCTTCTATATCTTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGT
GTGTGTGTGTGTGTGTGTGTTTTTTTTGATGTGAGGGCGTTGTTTTTCTT
TCTTCCTTTCTTTTTCTCTCCCTCTCCGTTTCTCTTTCTCTCTCTTTATT
TTCCATTGTGCGCCCCTCCGTGTGCATCTCTGATTTTTCGTTTTACCTCC
TCCGTCTTTATCTTATAATTGTTTTGCGCTTATTTCCGCGTACGATACAT
TTCCCTATGATTTCTCATTTTTCATACCCCCGCATTACTTTTCCCCTCCT
TTTCGTTATTTTTCTGATCTCCACCTTCTCTGTTTTTCCGTTGGATGAAA
CTAGACATACCCTATAGCCGCTCTCCTCGTCAGCTTCTTTCCTTTTTTTG
GCTCCCGTTTACCTTTACGCATCAGTGCGCCTTCCTAGTACGTCCTATAT
TCATCATCACTCATTCGCGCTCCTTTCCGCTCCATATCTTCAGTCGACCT
CTTTAATCTTGTACCCCTAATGCCCTCTCGCGTTTCGATCGGTTGTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_b14.g1 MSMg01no297_b14.g1 CHROMAT_FILE:
MSMg01no297_b14.g1 PHD_FILE: MSMg01no297_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:28 2005
         (249 letters)



>mm_chr4_13997938_13998586
          Length = 649

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccttcctgccattatcattaagtacacatattcttgaacagaggtaatggaaatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccttcctgccattatcattaagtacacatattcttgaacagaggtaatggaaatatg 260

                                                                       
Query: 61  tcttctattttgagataaccatgagaaactcaaaccgttgacctttctttctctgccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctattttgagataaccatgagaaactcaaaccgttgacctttctttctctgccctc 320

                                                                       
Query: 121 caacctctcctgtgtcctctttttccaacctcttctatatcttctctctctctctctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacctctcctgtgtcctctttttccaacctcttctatatcttctctctctctctctctc 380

                                                                       
Query: 181 tctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtg 240
           ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 381 tctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtg 440

                  
Query: 241 tgtgtgt 247
           |||||||
Sbjct: 441 tgtgtgt 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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