CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAAACTCACCTNAGAGAAACTATTTGAAAAGTGAGTCAGGAAT
CAAAATTTCTAATGGAAAGAAAAATTCAGTGAAGTGGTAAATGAATGACA
TGGAAAATCATTGAGGTGCTAACAGCACCATTTCAACCAGTATCCTATCC
ACCACATCTCATGCTGCATTACACTTGTTGCTCATTAACCCTTTTCACCC
TCCCATTCCTGCTTCTGAATCTGTGACCACTGACAGAACTCTGCATATCT
TCTTATATCTTAAAGTCGTCTCACTTTAGTTTTTCAAAGGTTTATGGGCT
ACTTTTTATATTTTCTCTCTCTGGTGTACTTTAGTATCAGTTGCTAATTT
TCATAGAAAATCCAATTACACGGTTGGGGTCTATCTCAGTTAGGGTTTTA
CTGCTGTGAAAACACACCATGACCAAGGTAAGTCTTATAAGGACAACATT
TTATTGGGACTGGCTTACAGGTTTAGAGATTCAGTCCATTACCATCAAGG
TGGGAGCATAGCAGTGTCCAGGTGGGCGTGGTGCAGGAGGAGCTGAGAGT
TCGACATCTTGTTCCGAGGTCAAACAGGAGAAGACCGGCTTCCAGGAAGC
TAGAAACAGGGTCTAAAAGCCCACCCCCACAGCAATACACTTCCTCCAAC
AAGGTCACACCTCTTAATTGTGCTACTCTCTGGGN

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACACCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTACGCCCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCACAACCTAGGATATCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACCGAAGT

Query= MSMg01no297_d11.b1 MSMg01no297_d11.b1 CHROMAT_FILE:
MSMg01no297_d11.b1 PHD_FILE: MSMg01no297_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:36 2005
         (662 letters)



>mm_chr4_24809469_24810531
          Length = 1063

 Score = 1139 bits (589), Expect = 0.0
 Identities = 645/665 (96%), Gaps = 5/665 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaactatttgaaaagtgagtcaggaatcaaaatttctaatggaaagaaaaattcagt- 59
           |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| | 
Sbjct: 201 agaaactacttgaaaagtgagtcagggatcaaaatgtctaatggaaagaaaaattcaatg 260

                                                                       
Query: 60  gaagtggtaaatgaatgacatggaaaatcattgaggtgctaacagcaccatttcaaccag 119
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gaagtggtaaatgaatgacacggaaaatcattgaggtgctaacagaaccatttcaaccag 320

                                                                       
Query: 120 tatcctatccaccacatctcatgct--gcattacacttgttgctcattaacccttttcac 177
           |||||||||||||||| |||||| |  |  ||| || |||||||||||||||||||||||
Sbjct: 321 tatcctatccaccacacctcatgataag--ttaaacctgttgctcattaacccttttcac 378

                                                                       
Query: 178 cctcccattcctgcttctgaatctgtgaccactgacagaactctgcatatcttcttatat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctcccattcctgcttctgaatctgtgaccactgacagaactctgcatatcttcttatat 438

                                                                       
Query: 238 cttaaagtcgtctcactttagtttttcaaaggtttatgggctactttttatattttctct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cttaaagtcgtctcactttagtttttcaaaggtttatgggctactttttatattttctct 498

                                                                       
Query: 298 ctctggtgtactttagtatcagttgctaattttcatagaaaatccaattacacggttggg 357
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 499 ctctggtgtactttagtatcagttgctaattttcatagaaaatccaactacagggttggg 558

                                                                       
Query: 358 gtctatctcagttagggttttactgctgtgaaaacacaccatgaccaaggtaagtcttat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtctatctcagttagggttttactgctgtgaaaacacaccatgaccaaggtaagtcttat 618

                                                                       
Query: 418 aaggacaacattttattgggactggcttacaggtttagagattcagtccattaccatcaa 477
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaggacaatattttattgggactggcttacaggtttagagattcagtccattaccatcaa 678

                                                                       
Query: 478 ggtgggagcatagcagtgtccaggtgggcgtggtgcaggaggagctgagagttcgacatc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggtgggagcatagcagtgtccaggtgggcgtggtgcaggaggagctgagagttcgacatc 738

                                                                       
Query: 538 ttgttccgaggtcaaacaggagaagaccggcttccaggaagctagaaacagggtctaaaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttgttccgaggtcaaacaggagaagaccggcttccaggaagctagaaacagggtctaaaa 798

                                                                       
Query: 598 gcccacccccacagcaatacacttcctccaacaaggtcacacctcttaattgtgctactc 657
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 799 gcccacccccacagcaatacacttcctccaacaaggccacacctcttaattgtgctactc 858

                
Query: 658 tctgg 662
            ||||
Sbjct: 859 cctgg 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space:   686556
Effective search space used:   686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)