Query= MSMg01no297_g22.b1 MSMg01no297_g22.b1 CHROMAT_FILE:
MSMg01no297_g22.b1 PHD_FILE: MSMg01no297_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:52 2005
(677 letters)
>mm_chr4_15025450_15026525
Length = 1076
Score = 1239 bits (641), Expect = 0.0
Identities = 665/673 (98%), Gaps = 1/673 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgtattaccgttatacctagtcatgctaaatgatattccataattaaaatta 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtaagaaagttatacctagtcatgctaaatgatattccataattaaaatta 264
Query: 65 aacactgtaaaaattatgggttaaagtcatacatgcatggagatatcaagaagtgagggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 aacactgtaaaaattatgggttaaagtcatacatgcatggagatatcaagaggtgagggt 324
Query: 125 ttcttcccatactttgctgtcatggagagcagaagccaagagctaggatggaacaagagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcttcccatactttgctgtcatggagagcagaagccaagagctaggatggaacaagagt 384
Query: 185 cagttttgtgaattatatgaaaaaaaatttcccactcttgagtggatatcagcatccttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagttttgtgaattatatgaaaaaaaatttcccactcttgagtggatatcagcatccttt 444
Query: 245 aaatatggagaaatgtttattcacttatatataacatggcatgtggtaccttctgcatgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatatggagaaatgtttattcacttatatataacatggcatgtggtaccttctgcatgt 504
Query: 305 attgaataactaaacaaataagtaggggataaatgattaatttcatggaatctgcaaact 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 attgaataactaaacaaataagtaggg-ataaatgattaatttcatggaatctgcaaact 563
Query: 365 caaccagaacaactgctatcaaatttgacattctggattgtcacaataaaaaggaaaaaa 424
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caaccagaataattgctatcaaatttgacattctggattgtcacaataaaaaggaaaaaa 623
Query: 425 gtctcagcaaaaaataaaaaataaaaaaataaattaaaaaaaataaaagaaattcttcat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtctcagcaaaaaataaaaaataaaaaaataaattaaaaaaaataaaagaaattcttcat 683
Query: 485 tgtggtctcaagtaagtctttatgcttttcaaccccatggcaattaggatgagaagatca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtggtctcaagtaagtctttatgcttttcaaccccatggcaattaggatgagaagatca 743
Query: 545 agaaaattaggtgtgcagctcatcaaaccctatggtcccatagaggtagatttctaatca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agaaaattaggtgtgcagctcatcaaaccctatggtcccatagaggtagatttctaatca 803
Query: 605 tgctggattgctttatgcttaacctaaagttgattaaaaatagaatccctgaaaaatcat 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgctggattgctttatgcttaacctaaagttgattaaaaatagaatccctgaaaaatcat 863
Query: 665 aaaaatgaaatta 677
|||||||||||||
Sbjct: 864 aaaaatgaaatta 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1076
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1066
Effective search space: 711022
Effective search space used: 711022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_g22.g1 MSMg01no297_g22.g1 CHROMAT_FILE:
MSMg01no297_g22.g1 PHD_FILE: MSMg01no297_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:52 2005
(261 letters)
>mm_chr4_15202015_15202673
Length = 659
Score = 466 bits (241), Expect = e-136
Identities = 256/261 (98%), Gaps = 2/261 (0%)
Strand = Plus / Minus
Query: 1 aagacaaatgtctgacacaggagatcatgtctcaaaaaaacaaaaccaaacaaaaccacc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 459 aagacaaatgtctgacacaggagatcatgtctc-aaaaaacaaaaccaaacaaaaccacc 401
Query: 61 aaaagcaaataatctctctaagtgtcattccctcttctgcagatgcttccacgcctgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaaagcaaataatctctctaagtgtcattccctcttctgcagatgcttccacgcctgtcc 341
Query: 121 ttgttcccagtcttggctgccaaggtcagaacctcacaggtcagtcctacagtaacagcc 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 340 -tgttcccagtcttggctgccaagatcagaacctcacaggtcagtcctacagtaacagcc 282
Query: 181 ccactcctcagtctttcaactacaacttgttaaatgcatcttctaaacgcaccaccaccc 240
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 281 ccactcctcactctttcaactacaacttgttaaatgcatcttctaaatgcaccaccaccc 222
Query: 241 catcagagtccacttagtgtc 261
|||||||||||||||||||||
Sbjct: 221 catcagagtccacttagtgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 659
Length adjustment: 9
Effective length of query: 252
Effective length of database: 650
Effective search space: 163800
Effective search space used: 163800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
