BAC Information

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BAC

Clone NameMSMg01-299F07
Chromosome4 (Build37)
Map Location 66,504,469 - 66,504,790
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299F07.T7 (MSMg01no299_f07.b1)MSMg01-299F07.TJ (MSMg01no299_f07.g1)
ACCAG426135AG426136
length763762
length of high quality
(start - end)
325 (38 - 362)291 (67 - 357)
definitionCHROMAT_FILE: MSMg01no299_f07.b1 PHD_FILE: MSMg01no299_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:14 2005CHROMAT_FILE: MSMg01no299_f07.g1 PHD_FILE: MSMg01no299_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
AAAAGTCACACTCTCTAAAATTCCAGAAGATCTCTAGAATTAAACCTGGA
ATACACAGTTAAAACTTTCCTTTTTTTCTTTCATTTCTTTCTTCTGCCTA
TATTTCTTTCTTTTGATTAAACTAATTGTTCCTTTATATCTTGTTGAAAA
CTCCCCAGCCCTTTATGGAAAGAGTTGTTATAAATAAACTACTCTGTGCA
TTAATGCATGCATGCATATGTATTTTCTTAATGACTCATGGTTTAAGTTG
AATGACCCTGACTGGCACTAACCACATAGAGAACTGTGGCACTTTCACTT
CTTGCTTTTCTATTTTGTACCCTGAAGCAGTGGGCTAGAGTGCACAGGAG
TTTCTGTGAGAGGGAAGGGGCACAGACTGTCGCCTTGCCTCTTCTGTGCT
ATCTGGCTGATTGACAAGACATTTACTGCATTAGAATTTGGGTTTTTATA
TCAGAAAAATGGGGAGATTCTTGATCTGCTATTTCACTTGGCTAACAAGA
GACAAATAATTAGGTGGCTATGTTCCAGTTTGAATGGAATTATGAAAATT
GTAGACATCTTAATTGATACTAATAACTTCATTCTCTTTCAAGCATATTG
TTTAAAATCGTTGTGAAGAATACATCCTAGGGCTGTCTTTCTTTTGNCTT
CCTCTTCTATTGNTCTGCATATTATTTTTTCTAACTTTGCTCATGTCATC
CAAAGTTCCTGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAGTGGGG
TTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGA
TATTAGTCCCCTATCTGATTTAGGATAGGTAAATATCCTTTCCCAATCTG
TTGGAGGCCTTTTTGTCTTATAGAAGGTGTCTTTTGCCTTGCAGAAGCTT
TGCAGTTTCATGAGGTCCCATTTGTCAATTCGAGGTGGGTTTCTTGTATG
CAGCAAAATGTTGCACCCTGTTTATGTAGCCAGTCTATTAGTCTATGTCT
TTTTATTTTTTTATTGAGCCCACTCGCCATTAAGAGATATTAAGGAAAAG
TAATTGTGGCTTCCTAGATTTTTTAAGAAGATAGGGTTGAGAGGCGGGTC
TTGAGGCTATCTTCTTTTAGGTTTGTTAAAGGATTACTTTCTTGCTTTTT
GTAGGGCATAATTTCCCTCCTTGTGTTGGAGTTTTGCCTTTATTATCCTT
TGAAGGGCTGGATTCATGGAAAAATATTGTGTGAATTTGGGTTTATTACG
GAATACTTTGGGTTCTACCTCTATGGCAATTGAAAGTTTTGCGGCGTATC
GTACCACGCCCTGGTATTCGGGCTTCTTAACGTCCGCTTCAATTCTGCCC
AGGATTTTCTGGCTTTTCAAGACTCCGAAGAGGATCCTGAATTATCTCTT
ACAAGGCTTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_f07.b1 MSMg01no299_f07.b1 CHROMAT_FILE:
MSMg01no299_f07.b1 PHD_FILE: MSMg01no299_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:14 2005
         (325 letters)



>mm_chr4_66504143_66504867
          Length = 725

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccaaaagtcacactctctaaaattccagaagatctctagaattaaacctgga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggaattctccaaaagtcacactctctaaaattccagaagatctctagaattaaacctgga 589

                                                                       
Query: 64  atacacagttaaaactttcctttttttctttcatttctttcttctgcctatatttctttc 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 588 atacacagttaaaactttcctttctttctttcatttctttcttctgcctatatttctttc 529

                                                                       
Query: 124 ttttgattaaactaattgttcctttatatcttgttgaaaactccccagccctttatggaa 183
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 528 ttttgattaaactaattgttcctttatattttgttgaaaactccccagccctttatggaa 469

                                                                       
Query: 184 agagttgttataaataaactactctgtgcattaatgcatgcatgcatatgtattttctta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agagttgttataaataaactactctgtgcattaatgcatgcatgcatatgtattttctta 409

                                                                       
Query: 244 atgactcatggtttaagttgaatgaccctgactggcactaaccacatagagaactgtggc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atgactcatggtttaagttgaatgaccctgactggcactaaccacatagagaactgtggc 349

                                 
Query: 304 actttcacttcttgcttttcta 325
           ||||||||||||||||||||||
Sbjct: 348 actttcacttcttgcttttcta 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)