Query= MSMg01no300_a01.b1 MSMg01no300_a01.b1 CHROMAT_FILE:
MSMg01no300_a01.b1 PHD_FILE: MSMg01no300_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:04 2005
(428 letters)
>mm_chr4_14088486_14089312
Length = 827
Score = 766 bits (396), Expect = 0.0
Identities = 405/408 (99%), Gaps = 1/408 (0%)
Strand = Plus / Minus
Query: 21 tgcgaaaaccagggtctgagtttaggtgatactactgaaaatacaactctgttagtttct 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tgcgaaaaccagggtctgagtttaggtgatactactgaaaatacaactctgttagtttct 768
Query: 81 gcttctaaaaatacccaggaacaatgacaccttcagataactaggagcctgtgtgaacat 140
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 767 gcttctaaaaatacccaggaacaatgacaccttcagataactaggagcccgtgtgaacat 708
Query: 141 gtcagcagtatttctctcctagttcaaatctttctaaaaaaacaaaacaaacaaacaaac 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gtcagcagtatttctctcctagttcaaatctttctaaaaaaacaaaacaaacaaacaaac 648
Query: 201 aaaaaaaccaaaaaacaaacccaaaaaacaaaaaacctctcgccgctgtgaaggcagatc 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaaaaaaccaaaaaacaaacccaaaaaacaaaaaacctctcgccgctgtgaaggcagatc 588
Query: 261 caggtctgcctttgcaggtcctgtgatctccagcatattactcagcctttctgaatttat 320
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 587 caggtctgcctttgcaggtcctgtgatctccagcatatcactcagcctttctgaatttat 528
Query: 321 tgtcgcccccccccccaaaaaaaagaattactgtgaagaacaaaggcattgatgtgtgca 380
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tgtcgccccccccccc-aaaaaaagaattactgtgaagaacaaaggcattgatgtgtgca 469
Query: 381 gtgttctcttcacaacaggtacatagtaggtgcttagtgagtgcagtt 428
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtgttctcttcacaacaggtacatagtaggtgcttagtgagtgcagtt 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 827
Length adjustment: 9
Effective length of query: 419
Effective length of database: 818
Effective search space: 342742
Effective search space used: 342742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_a01.g1 MSMg01no300_a01.g1 CHROMAT_FILE:
MSMg01no300_a01.g1 PHD_FILE: MSMg01no300_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:05 2005
(441 letters)
>mm_chr4_14030416_14031256
Length = 841
Score = 839 bits (434), Expect = 0.0
Identities = 437/438 (99%)
Strand = Plus / Plus
Query: 1 tggtttttgatgagcaaatgttccctttatcctacagaacagataccatccgtctcctgt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tggtttttgatgagcaaatgttccctttatcctacagaacggataccatccgtctcctgt 260
Query: 61 cttctgctcttctcctgtttgctcatctttaatggcaatgtgccttatggattgttgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctgctcttctcctgtttgctcatctttaatggcaatgtgccttatggattgttgaac 320
Query: 121 tttctaaagacgcctgctgtgttgattaattgctaatgaatgctaatgaaggagtgaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctaaagacgcctgctgtgttgattaattgctaatgaatgctaatgaaggagtgaggt 380
Query: 181 gaatctgcactatgatgtatttaaggggtggctgattagatttagccctgtgtgtcagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatctgcactatgatgtatttaaggggtggctgattagatttagccctgtgtgtcagga 440
Query: 241 gagtacttaccacaagaacaacaagtccataaatatgtactgagtggcagtagtcgccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtacttaccacaagaacaacaagtccataaatatgtactgagtggcagtagtcgccct 500
Query: 301 cagtgactgtttttggcctttccagtccggttcccattctcatttcaccagaatagagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtgactgtttttggcctttccagtccggttcccattctcatttcaccagaatagagac 560
Query: 361 tgaaatttttagcatttgtaactgaaatgcattttcttgttaaaagatatggtaattttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaatttttagcatttgtaactgaaatgcattttcttgttaaaagatatggtaattttg 620
Query: 421 ctaatgggttttaatgaa 438
||||||||||||||||||
Sbjct: 621 ctaatgggttttaatgaa 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
