BAC Information

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BAC

Clone NameMSMg01-300F01
Chromosome4 (Build37)
Map Location 116,227,703 - 116,228,119
singlet/doubletsinglet
Overlap geneTmem69
Upstream geneLOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp
Downstream geneGpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300F01.T7 (MSMg01no300_f01.b1)MSMg01-300F01.TJ (MSMg01no300_f01.g1)
ACCAG426835AG426836
length745859
length of high quality
(start - end)
419 (72 - 490)64 (128 - 191)
definitionCHROMAT_FILE: MSMg01no300_f01.b1 PHD_FILE: MSMg01no300_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:26 2005CHROMAT_FILE: MSMg01no300_f01.g1 PHD_FILE: MSMg01no300_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCCAAAAGGTGTTGCATATATGGAAAACATTTAATTACATTGCTTGAT
TCACAACAAAGCGATATTTGTGGCTACTTTCATTTATAGTGTAAAAATTC
CACAGCCCCGAGTACACAATAACTAAAGAGAATATATAATTATTGGGAAC
AAAAGGTATAACTGTCAGTTTTAAAGATGAGGCACTGGTGCCTAAGAAGT
GGTAGAGATGTTTGCTAAATCCAAATGTTCAGTTTCACATTGCTCTTTTT
ATTAAACCAAACAGCCAAAACTAAAATTATTCTTCAGAAAACAAAAACAG
CACAAAATGTATTTCCTTAATATGTGACACTTTGGCAAATAAATACATAA
ATAAATCAAAATAAATTATGTTTCATCGAAGAGATTTTCTTGACTTTTTG
TTGTTGTTGTTGTTGTTTTGGGTTTTTTTTGAGACAGGTTTTCTTTGTAC
AACCCTGTCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGTATT
CTTACATCTGTCTGCCCCCGTCTCCCATTGTCCACCTGCTGGCCCTACTG
TTATGTTCCACCATATTTCTCCCATTACCCCCTCTCATTTACTTTTCTGT
TCACTTTTTTTTTCTCCTCCTTTTTTTACCGCCTTCTTTCGCTGTTTCCC
CCCTTTTTTTCCCCCTTCTCTTCCTCTTTTTTTTTCCCTCTTCCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGCCAATCTGGTCTACAAAGCAAGTT
TCAGGAAAGCCAGTGCTATTCACACCAACTCTGACTCAAACAAACGAAAG
GGGGGGGGGGGTGAGAAGAGAGAGAGAGGAGGGGAAGGGGGAGCCCTCCT
CACTCCTTCTCCCCCCCCCGCCGCCGTTCTCTTCTACTATCCTTTATTCT
CGTCACCCGTTCCCTCCTACCTTCCTTTCCCCTTTGTCTTCCCTTCCCCA
CGTTTTTATCCATTGCCTCCAACTTTTTTTTTTTTCCTCCCCTTCCCTCC
CACCCGAAGGACGATGTTTTTTTTTTTTCCCACCCCCCCCCCCCCCTCCT
TGCCTACCTTCTCCTGTCATCTTTTCCGACCTTTTCCCCTTAATAAAAAA
AAAAAAATATTTCCGTGTGGGGCGGGGGCGGTCCGCAACTTTTGTTGCCC
CACGCCCTTTCTTTTTCCCCCTCCTTTTTCCTTTCCCCGTTCCGTTCCCC
CTTTACTTTATTCCCTTTTCCTTCCCCCCTTTTGCCCCCTTCCTTTCTTG
CCCCTCTTGCCCCCGTTTTTTCCACCTCTTTCCCGTTTTCATCCTGTCTC
CCGTTTTTTCGTCCTTCTCCCCCGCCCTTGCTCCCCCTTCTGATCCCCCC
CTATTTTCCCCTTTTTTCTTTCCCCATTCCTTCTCATTTCCCCCCTCTTG
TCTCCTCTTCTTCCCCGCCTTTTCCTTCCCTTTTCCCCCCTTTTTTCCAC
CCTATTTCCACCTTCTTCCGCTTTTCCTCCGTCTTTTTTTCTTCCCCCCC
CTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_f01.b1 MSMg01no300_f01.b1 CHROMAT_FILE:
MSMg01no300_f01.b1 PHD_FILE: MSMg01no300_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:26 2005
         (419 letters)



>mm_chr4_116227544_116228362
          Length = 819

 Score =  775 bits (401), Expect = 0.0
 Identities = 413/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaaaacatttaattacattgcttgattcacaacaaagcgatatttgtggctactttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 576 atggaaaacatttaattacattgcttgattcacaacaaagcgatatttgtggctgctctc 517

                                                                       
Query: 61  atttatagtgtaaaaattccacagccccgagtacacaataactaaagagaatatataatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 516 atttatagtgtaaaaattccacagccccgagtacacaataactaaagagaatatatgatt 457

                                                                       
Query: 121 attgggaacaaaaggtataactgtcagttttaaagatgaggcactggtgcctaagaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 attgggaacaaaaggtataactgtcagttttaaagatgaggcactggtgcctaagaagtg 397

                                                                       
Query: 181 gtagagatgtttgctaaatccaaatgttcagtttcacattgctctttttattaaaccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtagagatgtttgctaaatccaaatgttcagtttcacattgctctttttattaaaccaaa 337

                                                                       
Query: 241 cagccaaaactaaaattattcttcagaaaacaaaaacagcacaaaatgtatttccttaat 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 336 cagccaaaactaaaattattcttcagaaaacaaaaacagcacaaaacgtatttccttaat 277

                                                                       
Query: 301 atgtgacactttggcaaataaatacataaataaatcaaaataaattatgtttcatcgaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atgtgacactttggcaaataaatacataaataaatcaaaataaattatgtttcatcgaag 217

                                                                    
Query: 361 agattttcttgactttttgttgttgttgttgttgttttgggttttttttgagacagg 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agattttcttgactttttgttgttgttgttgttgttttgggttttttttgagacagg 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)