BAC Information

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BAC

Clone NameMSMg01-300J19
Chromosome4 (Build37)
Map Location 47,911,614 - 48,092,664
singlet/doubletdoublet
Overlap geneLOC100040788, Nr4a3
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneStx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300J19.T7 (MSMg01no300_j19.b1)MSMg01-300J19.TJ (MSMg01no300_j19.g1)
ACCAG427053AG427054
length739736
length of high quality
(start - end)
296 (73 - 368)240 (125 - 364)
definitionCHROMAT_FILE: MSMg01no300_j19.b1 PHD_FILE: MSMg01no300_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:48 2005CHROMAT_FILE: MSMg01no300_j19.g1 PHD_FILE: MSMg01no300_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,911,614 - 47,911,909)(48,092,426 - 48,092,664)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCATGTCAAATATTCCCAACCTACCAGAGGCTTACTCGACTTTTTT
TATTCTATCTTTTGTTTGCTTTTATTCCCAGCATAAAGAGTGATTATATA
TAAAGTAAGCCTATTTTCTATCAAAAATCATACTATTGCTCTCTTTAAAA
TGTCTTGGAAAATGGCAAGGAGTGTTCTACCATCCCAATGAATCAAGGAT
ACAGATAGAACTGTGAGCCATAGTTTATCAGATGAGAAACTAAGACACAG
CAAGGCTGTACAACTCGTCCCAAGCACTTAGCTATTTAGATAGCAGACCC
AGGATTTAAGTTCTTTGTCTCTATGACCTAAGCCCTTAACCATAACAGCT
CTGTCGGGCCTTCAGAGACAAGCAGGGTATTTCAAGAGTCTGAATCAAGA
CAGTAGATGGAGGATGAAAAAGGGCCATCCTTGTACTCTCTGAGGGGTGT
TACAAAGTAAAGACCATCACTTCCATAGCAACAGCACGTGGTAAAAATGA
ACTCACATTACCGTACAACAGGACAAGACAGAAATCTTGTCAGAGCACCG
ATAACTTTCACAGATGGGATATTAAGCAAAAGCATTTTTAGGTTCTGAAG
AGTCGTAGTTTCTGGGCGGCTACTGGATGGGAAGCTAAGCAGTGTTCTGA
GCCTGTCACAAAATCTGAAGTCTGCAGTTCTGGATCCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGAGGAATTCATAGACACTCCTGTTA
GGAGCCAAAGGCACCTCTTGCTCCCTTTGTTGTTGTGAACACTCACAGGA
TCTGTGGCTTCTTTAGTTTTCCATAGGAGCTAAGATAAAATTCAGTCTCT
GTGTATACTCCTGCCAGCAGCCAGCAAGGTTTTCAGTTCACCAGGGAGTC
ACCAACTGTCTGGGACCTTCTCAGCAATTTAAAATTCCTTAAAATTCTAA
TCACTGACATTTAGTTAAAGGGAACTTCCCCCACCCCTTGCAGATTAGCA
AACAGCTACAGAGTTTATGTGTGGCGCCCATACTACAGAGGGAGAGAGGG
AGTCAGATATTTTCTCATTTCACAGAGATTTATACATGGAGGATTAACAT
TTCTCTGGGCAGGAGGGGTGTAGCTTAGTGGTGGAGTGCTCGCTTAGCAC
ACACGCCCTGTGTTGAATCCTCGTCAGCAACAGCAATCATAAAAATTGTT
GTCACCCCCTCCAATGATTTAACCAAACGAGCTTTATACACTGGGTTTAT
ACAATCCTGCATTTCAGGGTTATGCTTCCAAGATGTCAAGACAGAACTCT
TAGAGTCGTGCTTAAGTATTAGACATACATCACAAACACTGTGCATGTAC
ATGACAATAGATTTTATCTGCTTTGCTCAAACTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_j19.b1 MSMg01no300_j19.b1 CHROMAT_FILE:
MSMg01no300_j19.b1 PHD_FILE: MSMg01no300_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:48 2005
         (296 letters)



>mm_chr4_47911414_47912109
          Length = 696

 Score =  557 bits (288), Expect = e-163
 Identities = 294/296 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctaccagaggcttactcgactttttttattctatcttttgtttgcttttattcccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 201 acctaccagaggcttactcgactttttttattctatcttttgtttgcttctattgccagc 260

                                                                       
Query: 61  ataaagagtgattatatataaagtaagcctattttctatcaaaaatcatactattgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagagtgattatatataaagtaagcctattttctatcaaaaatcatactattgctct 320

                                                                       
Query: 121 ctttaaaatgtcttggaaaatggcaaggagtgttctaccatcccaatgaatcaaggatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttaaaatgtcttggaaaatggcaaggagtgttctaccatcccaatgaatcaaggatac 380

                                                                       
Query: 181 agatagaactgtgagccatagtttatcagatgagaaactaagacacagcaaggctgtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatagaactgtgagccatagtttatcagatgagaaactaagacacagcaaggctgtaca 440

                                                                   
Query: 241 actcgtcccaagcacttagctatttagatagcagacccaggatttaagttctttgt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcgtcccaagcacttagctatttagatagcagacccaggatttaagttctttgt 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no300_j19.g1 MSMg01no300_j19.g1 CHROMAT_FILE:
MSMg01no300_j19.g1 PHD_FILE: MSMg01no300_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:48 2005
         (240 letters)



>mm_chr4_48092226_48092865
          Length = 640

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgttgttgtgaacactcacaggatctgtggcttctttagttttccataggagctaag 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 439 ctttgttgttgtgaacactcacaggagctgtggcttctttagttttccataggagctaag 380

                                                                       
Query: 61  ataaaattcagtctctgtgtatactcctgccagcagccagcaaggttttcagttcaccag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataaaattcagcctctgtgtatactcctgccagcagccagcaaggttttcagttcaccag 320

                                                                       
Query: 121 ggagtcaccaactgtctgggaccttctcagcaatttaaaattccttaaaattctaatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggagtcaccaactgtctgggaccttctcagcaatttaaaattccttaaaattctaatcac 260

                                                                      
Query: 181 tgacatttagttaaagggaacttcccccaccccttgcagattagcaaacagctacagag 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgacatttagttaaagggaacttcccccaccccttgcagattagcaaacagctacagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)