Query= MSMg01no301_j16.b1 MSMg01no301_j16.b1 CHROMAT_FILE:
MSMg01no301_j16.b1 PHD_FILE: MSMg01no301_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:02 2005
(180 letters)
>mm_chr4_6623816_6624395
Length = 580
Score = 329 bits (170), Expect = 7e-95
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 5 gaattccaaatttagtagagttctagaaacagtaagaaccaaacagtaaccactgcctca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaattccaaatttagtagagttctagaaacagtaagaaccaaacagtaaccactgcctca 315
Query: 65 ttaaaaaatgtatacaaagagcctggaatgagtatctttccaacatgtaacagaccctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttaaaaaatgtatacaaagagcctggaatgagtatctttccaacatgtaacagaccctgg 255
Query: 125 gtataatccctggcagtgcaaatgcaagtgtgttggtggaggtggggggg 174
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtataatccctggcagtgcaaatgcaagtgtgttggtggaggtggggggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space: 98384
Effective search space used: 98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no301_j16.g1 MSMg01no301_j16.g1 CHROMAT_FILE:
MSMg01no301_j16.g1 PHD_FILE: MSMg01no301_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:02 2005
(647 letters)
>mm_chr4_6602754_6603800
Length = 1047
Score = 1205 bits (623), Expect = 0.0
Identities = 641/647 (99%)
Strand = Plus / Plus
Query: 1 ttttatggcgtcatgtccttgaatagatatactgcttgctattcctattagccctttatt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttttatggcgtcatgtccttgaatagatatactgcttgctattcctactagccctttatt 260
Query: 61 tttctatcttcttcctcattcccgttggtgggaaacatctccttccaattagaatgatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctatcttcttcctcattcccgttggtgggaaacatctccttccaattagaatgatca 320
Query: 121 gaattcattattttaatcttctggctaaacagttgagctctttctcacccctagtcttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gaattcattattttaatcttctggctaaacagttgagctctttctcacccctactcttac 380
Query: 181 ttcttgatttgttcttgcaaatatagttccactgtggctgcaggaccaaaagcagaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttgatttgttcttgcaaatatagttccactgtggctgcaggaccaaaagcagaggaa 440
Query: 241 aaccaaaccacatcttttaaccagccttccttatacccttagcttatttagacccttagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccaaaccacatcttttaaccagccttccttatacccttagcttatttagacccttagc 500
Query: 301 ccagctattgagttacctacaacatattaaaattaaagactatctgcatgtctttcattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagctattgagttacctacaacatattaaaattaaagactatctgcatgtctttcattc 560
Query: 361 gagaacataaaacattaaagaggatagtgaacccaccaccaaaagtgatttaattattta 420
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 561 gagaacataaaacattaaagaggatagtgaacctaccaccaagagtgatttaattattta 620
Query: 421 tttctttgattcaacacattacttttgcaaaaggactcaagtggttgatgtcatcctgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctttgattcaacacattacttttgcaaaaggactcaagtggttgatgtcatcctgca 680
Query: 481 tcttttgctgaaaaggagtctgtaagaataaaatggagcattcatttgatacttgatgtt 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 tcttttgctgaaaaggagtctgtaagaataaaatggggcattcatttgatacttgatgtt 740
Query: 541 catgtttacctggtactagactcatgttccgtggaataaccacaaagttgctttgggcct 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 catgtttacctggtactagactcatgttccgtggaataaccacaaagttgctttggacct 800
Query: 601 aagtaaccaactcatagtctagtggaggaaacaatctagaagcaaat 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagtaaccaactcatagtctagtggaggaaacaatctagaagcaaat 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
