BAC Information

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BAC

Clone NameMSMg01-301K22
Chromosome4 (Build37)
Map Location 17,506,941 - 17,576,403
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301K22.T7 (MSMg01no301_k22.b1)MSMg01-301K22.TJ (MSMg01no301_k22.g1)
ACCAG427808AG427809
length749750
length of high quality
(start - end)		685 (45 - 729)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no301_k22.b1 PHD_FILE: MSMg01no301_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:08 2005CHROMAT_FILE: MSMg01no301_k22.g1 PHD_FILE: MSMg01no301_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,575,834 - 17,576,403)(17,506,941 - 17,507,234)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATAAAAGTCTCAAAAATGTTGCAATGTGAAATTTAGCTGAAACG
GAATTTATTATTTTGAACATAAAGTTGAGTTTTATTCCAAAAATATTACT
ATTATTTTAGCTCATGGCTTCCAGTTCCAATTTGTTTTCTTGGGCAGATG
CTTGGTTTCTTTAAATATGCAGAATGTGATGATTTTCTCTAATACTTGAT
GTTAATTGTTCTAAGATAAATTAACTTTGTGGCTTTGAAAGAGGATCCTT
AAATAAGTCAATTCCTTGTTAAGAGAAGTGTAACTATAATATCTACTTCA
TAGAAAATACATATTAACTCCTCATCTTTTGATGAATTTCCAACTCATCA
AAACTGAATTATAATAAACATTTTCCTTTGAAAGTGTTGCCTTTTCTCTT
CAAACCAATGGAAACCCAAAATAAGACAGAAGTTGGTACTAGGGACTGGG
TTATTGTTGTGATAAATCTGACCACACTTTTATTTTGAGGAATGTGGATT
GTGGGATTTTGTAAATCAGCCAAATGTTTTAAGTGGGGATCAGAATTAAT
AAAATGGTACCAGGAAGCACAATGGAGCTAAATACTGTGTTTAAGAACAT
TAAATGGAATTAAGGGAGTAGTGAGTGACCTTGGGGCAAGATCCTACTAA
TCTAAGCTTATTGTTTATATATATGCAGTTGAACAAGGGATAGTTATGT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGAGCAAGAAAGAAGTAAATGCTTT
TTTTGTTTTAAAAGTTTCTATGGCTATGATGTCTCTTCCCAGGAGTATAA
TTTTTAGTAAAAAAGGTACAAAGATAATCTGTAGTCTGATATGTTTGCTG
CTGAAGCCAGCCTCCAGGTTCTGACTCTCCTGGGAAATATTATGGCTCTG
GTCATTCTTTCTGCTATACCTGAAAGGGCTCCAGAATAAGAGAGACATCT
AGGCTGGTGAGAGATTACCCTCTTCATAGTAACTATCAGTGATTATACAA
ACTAGGGGAGGGGTCTTGTTTTTCTCACCACTCCGAGCTTTCCCAGCCTT
TTATGTTTCTTTCACTTTTCTCATACATCCAAAAAGAAATATGTCAATTC
AAAAAAAAAATGTCTACATAACAAATTTAAGAGATGAACTTCATACTCAG
CGACTCTTTTCTCCTTGTGGTACTGTAAACAACAAAGATAACTTTACATT
TAACATTTTATTAATTAACATATTAAAACATTTTCCAAATGAAGTTCAAA
ATTTCTCCTATTTATATGGATTTAGAGTGGTAAGCTATTAAAAGGTATTT
TAATATAGTGATTAAAACATCCCATATTAGATGAGAGTCACTATTATACA
TTAACATAATGCCCACATAATTTCAATTTAAATATATTTCCATATTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_k22.b1 MSMg01no301_k22.b1 CHROMAT_FILE:
MSMg01no301_k22.b1 PHD_FILE: MSMg01no301_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:08 2005
         (685 letters)



>mm_chr4_17575834_17576918
          Length = 1085

 Score = 1025 bits (530), Expect = 0.0
 Identities = 560/570 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcataaaagtctcaaaaatgttgcaatgtgaaatttagctgaaacggaatttat 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 570 gaattctcataaaagtcttaaaaatgttgcaatgtgaaatttagctgaaacagaatttat 511

                                                                       
Query: 65  tattttgaacataaagttgagttttattccaaaaatattactattattttagctcatggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tattttgaacataaagttgagttttattccaaaaatattactattattttagctcatggc 451

                                                                       
Query: 125 ttccagttccaatttgttttcttgggcagatgcttggtttctttaaatatgcagaatgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttccagttccaatttgttttcttgggcagatgcttggtttctttaaatatgcagaatgtg 391

                                                                       
Query: 185 atgattttctctaatacttgatgttaattgttctaagataaattaactttgtggctttga 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 390 atgattttctctaatacttgatgttaattgttctaagataaattaagtttgtggctttga 331

                                                                       
Query: 245 aagaggatccttaaataagtcaattccttgttaagagaagtgtaactataatatctactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aagaggatccttaaataagtcaattccttgttaagagaagtgtaactataatatctactt 271

                                                                       
Query: 305 catagaaaatacatattaactcctcatcttttgatgaatttccaactcatcaaaactgaa 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 270 catagaaaatacatattaactcttcatcttttgatgaatttccaactcatcaaaactgaa 211

                                                                       
Query: 365 ttataataaacattttcctttgaaagtgttgccttttctcttcaaaccaatggaaaccca 424
           |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 210 ttataatacacattttcctttgcaagtgttgccttttctcttcaaaccaatggaaaccaa 151

                                                                       
Query: 425 aaataagacagaagttggtactagggactgggttattgttgtgataaatctgaccacact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 150 aaataagacagaagttggtactagggactgggttattgttgtgataaatctgatcacact 91

                                                                       
Query: 485 tttattttgaggaatgtggattgtgggattttgtaaatcagccaaatgttttaagtgggg 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 90  tttattttgaggaatgtggattgtgggattttgtaaatcagccaaatgttttaagtggag 31

                                         
Query: 545 atcagaattaataaaatggtaccaggaagc 574
           |||||||||||||||| |||||||||||||
Sbjct: 30  atcagaattaataaaagggtaccaggaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no301_k22.g1 MSMg01no301_k22.g1 CHROMAT_FILE:
MSMg01no301_k22.g1 PHD_FILE: MSMg01no301_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:08 2005
         (294 letters)



>mm_chr4_17506741_17507434
          Length = 694

 Score =  514 bits (266), Expect = e-150
 Identities = 287/294 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagcaagaaagaagtaaatgctttttttgttttaaaagtttctatggctatgatgtc 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||
Sbjct: 201 tgtgagcaagaaagaagtaaatgctttttttgttttaagagtttctatggccgtgatgtc 260

                                                                       
Query: 61  tcttcccaggagtataatttttagtaaaaaaggtacaaagataatctgtagtctgatatg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcccaggagtacaatttttagtaaaaaaggtacaaagataatctgtagtctgatatg 320

                                                                       
Query: 121 tttgctgctgaagccagcctccaggttctgactctcctgggaaatattatggctctggtc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tttgctgctgaagccagcctccaggttctgactctccggggaaatattatggctctggtc 380

                                                                       
Query: 181 attctttctgctatacctgaaagggctccagaataagagagacatctaggctggtgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 attctttctgctatacctgaaagggctccagaataagagagacatctaggctggtcagag 440

                                                                 
Query: 241 attaccctcttcatagtaactatcagtgattatacaaactaggggaggggtctt 294
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 attaccctcttcatagtaactgtcagtgattatacaaactaggggaggggtctt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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