Query= MSMg01no302_b12.b1 MSMg01no302_b12.b1 CHROMAT_FILE:
MSMg01no302_b12.b1 PHD_FILE: MSMg01no302_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:39 2005
(643 letters)
>mm_chr4_19046404_19047446
Length = 1043
Score = 1156 bits (598), Expect = 0.0
Identities = 616/622 (99%)
Strand = Plus / Minus
Query: 22 ttaggagtatcacaatcctgcttagatcttcatgctagcccagtgacctacttcccactt 81
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 943 ttaggagtatcacaatcctgcttagaacttcatgctagcccagtgacctacttcccactt 884
Query: 82 atggtttccagagtagtaacacatcacattgatgtttcttgtaatcatttacatggacaa 141
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 883 atggtttccagagtagtaacacatcacattgatgtttctggtaatcatttacatggacaa 824
Query: 142 gaaaaaaaatcatacatgctctctcttacaattaaaggtaaagaggcttacataccatag 201
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gaaaaaaaaacatacatgctctctcttacaattaaaggtaaagaggcttacataccatag 764
Query: 202 tagaagtcacaatggggaacaggtggatgcacctcagagtatcctcacaaaaaccacagc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tagaagtcacaatggggaacaggtggatgcacctcagagtatcctcacaaaaaccacagc 704
Query: 262 atccaagtctgtatagacttcaattgcattttgcattttgtttgctaagcacctcccaat 321
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atcaaagtctgtagagacttcaattgcattttgcattttgtttgctaagcacctcccaat 644
Query: 322 tcaaaggactcctcccaatgacagctcttcaagctatgctctggttcttctcgcctatga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tcaaaggactcctcccaatgacagctcttcaagctatgctctggttcttctcgcctatga 584
Query: 382 agttatgactcccagatagtgcgtgcagaccagcctcctgagttggtttccagttagttt 441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agttatgactcctagatagtgcgtgcagaccagcctcctgagttggtttccagttagttt 524
Query: 442 ttgtttcctttaggaactttcaactcttccctctctgtaatcttctgcttgtgattcaga 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttgtttcctttaggaactttcaactcttccctctctgtaatcttctgcttgtgattcaga 464
Query: 502 gctctttgcagcttgataagcctagggaaatgggttttctcaaaagcaaagaagtctttt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gctctttgcagcttgataagcctagggaaatgggttttctcaaaagcaaagaagtctttt 404
Query: 562 cacattttattctcgacgagaactatttcaaagaacttggagttagaggagtgtatttaa 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cacattttattctcgacgagaactatttcaaagaacttggagttagaggagtgtatttaa 344
Query: 622 tggttttctcacctgcatgaaa 643
||||||||||||||||||||||
Sbjct: 343 tggttttctcacctgcatgaaa 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_b12.g1 MSMg01no302_b12.g1 CHROMAT_FILE:
MSMg01no302_b12.g1 PHD_FILE: MSMg01no302_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:39 2005
(468 letters)
>mm_chr4_18946107_18946967
Length = 861
Score = 804 bits (416), Expect = 0.0
Identities = 452/468 (96%), Gaps = 7/468 (1%)
Strand = Plus / Plus
Query: 1 attcttgccagaaacaactactaggtagcacatctttcctgtgacctagctctttggaaa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 attcttgccagaaacaactactaggtagcacatctttcctgtgaattagctctttggaaa 260
Query: 61 agtatgtgacgagatttcactgttgagttttcaattacatttggaaaagacatcacttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtatgtgacgagatttcactgttgagttttcaattacatttggaaaagacatcacttag 320
Query: 121 atacttgtgttttgcgatttgaaaactaacttacaagagttcataagagaataacttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacttgtgttttgcgatttgaaaactaacttacaagagttcataagagaataacttcca 380
Query: 181 acaagcagaattaatggagataaaatctttgctaaaagagtcaacaacaaataagataaa 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 acaagcagaattaatggagataaaatctttgctaaaa-------caacaaataagataaa 433
Query: 241 gtatagtcaggtgtatgcctataatcccagcactaaaaggatgtttattagagacctgaa 300
|||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct: 434 gtatagtcaggtgtatgcctataatcccggcactaaaaggatggggattagaaacctgaa 493
Query: 301 aactaaaaaatgagatactgtctcaaaagaaatatatgtaagcttataagatatgaataa 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aactaaaaaatgagatactatctcaaaagaaatatatgtaagcttataagatatgaataa 553
Query: 361 attatgatgctattatctatagaaacaaagaaaacatgtaagcaggtctacttttcatta 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attatgatgttattatctatagaaacaaagaaaacatgtaagcaggtctacttttcatta 613
Query: 421 atagttataggaaaatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atagttataggaaaatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 861
Length adjustment: 10
Effective length of query: 458
Effective length of database: 851
Effective search space: 389758
Effective search space used: 389758
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
