BAC Information

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BAC

Clone NameMSMg01-302D21
Chromosome4 (Build37)
Map Location 148,178,474 - 148,179,014
singlet/doubletsinglet
Overlap geneLOC100041755, Casz1
Upstream geneLOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742
Downstream genePex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302D21.T7 (MSMg01no302_d21.b1)MSMg01-302D21.TJ (MSMg01no302_d21.g1)
ACCAG428200AG428201
length728726
length of high quality
(start - end)		321 (45 - 365)541 (73 - 613)
definitionCHROMAT_FILE: MSMg01no302_d21.b1 PHD_FILE: MSMg01no302_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:50 2005CHROMAT_FILE: MSMg01no302_d21.g1 PHD_FILE: MSMg01no302_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACGCTCTTCCTGTTAGGACCCTTCAGATCCACTCCCTCTCAGTC
CTGGTTCCCACCCCCACCCCCATGCAACCGTCACTATAAATTCACCTCTT
GTGGGCATTTTAGGTAAGTGGTGTCACAGAGTGAGCTATTTCTGTGCCTG
GCTTCTTCTCATTGACACAGTGGTTTCGAGGTCACCCACATCACAGCGTT
CCTCTTCCCTCAGGGTCAGTGTTCCATTGTATGGGTGGTCCTCTGCCTGC
CACCAGTTGTTGGGCTGTCGTTAGATGATCCCCTGGTCATGCTTTTGACT
TCTTGTGCAGTGTGAGNTTTACCCGNTGGCCAGGNCCTCTACTGTTAGGC
TGTGCCTTTGGTCCCAACCCCTGTTACAAGTGACGTGAATAATACTGTTG
AGAACATTGCTGTGTAAATCTTACACAAAGACATGCTTAGATGGTGTCTA
CCATGGACTTGCTGGATGCCAAGGTTCTGCTTTCTGCTTCTTAATTATTT
TCTTTCTAATCACTTTTCTGAAGTATAATATACAACAGTAAGAGTCCTGG
GGTTTTGTTGTTGTTGTTATTTTTCAGTATCCTATTTGATAAATTATAAC
TCATTTATTTTGTGTAATCACAATGTAAGTGTGTGTGCGTGTGTGTTTCC
TATTATCCTAAAAAGTGCCTTTGTGCCT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCGAAAATCATAATCACAGCGGGCGAGAGCGGAGACTG
GGAGCGAAAAATCCGGGATCCGGCAACTTCGGTCGCGCATGCGCGCCCGC
GGCGCTCCATCCCAAACACACACACATTTTTCCCCGGACTTGGAAAGTCA
CCCAAAGCCGCCCCAAGTGCAGGTAAGAGACTCGGCGCTCCTTCCACCGC
GGCCCCTTCAAGCCCTCCACCTCTGCGGGCCTATTGGGGCGCCTCCAGGT
TTCACCCTTGTCCCGGTGCAGTTCACTACCCCCGGGGTTGCCGCTTGCAG
CTGGGAGCGGGCGAACGAGCGAACGACCGAGCCAGCCAGCCTGCGAGCGG
CGGCTGCCACCCAACTCCGGCTGTACGGGAGGTAGGGGGCACAGAGGGCT
GGCACCCCGGCGCGGGGCGGCGCGGCGCCCGCAGTGACCAGGGGAATGCC
CGGCGAGCCGCTCCAGTGGAGGGAGGGCTGCAGCTCCTGGGGGTCACTTA
CTCCAACTGAGGGGTCGGCGGGGTAGGGGAGAAGAGGGGGAGGTGCCAGG
CACGAGTACAGGACTTTGCAACTAGGGTGGGGGCGCTTTCCGCGCAGTGG
GCTTGGGGCGCATGTGCTTGTCAATACCTGGGGGAACGTTCCTTTCTCCA
CGCCCCCTTCCTGTTGCAAGTTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_d21.g1 MSMg01no302_d21.g1 CHROMAT_FILE:
MSMg01no302_d21.g1 PHD_FILE: MSMg01no302_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:50 2005
         (541 letters)



>mm_chr4_148178274_148179214
          Length = 941

 Score = 1046 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatcacagcgggcgagagcggagactgggagcgaaaaatccgggatccggcaacttcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatcacagcgggcgagagcggagactgggagcgaaaaatccgggatccggcaacttcgg 260

                                                                       
Query: 61  tcgcgcatgcgcgcccgcggcgctccatcccaaacacacacacatttttccccggacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgcgcatgcgcgcccgcggcgctccatcccaaacacacacacatttttccccggacttg 320

                                                                       
Query: 121 gaaagtcacccaaagccgccccaagtgcaggtaagagactcggcgctccttccaccgcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagtcacccaaagccgccccaagtgcaggtaagagactcggcgctccttccaccgcgg 380

                                                                       
Query: 181 ccccttcaagccctccacctctgcgggcctattggggcgcctccaggtttcacccttgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccttcaagccctccacctctgcgggcctattggggcgcctccaggtttcacccttgtc 440

                                                                       
Query: 241 ccggtgcagttcactacccccggggttgccgcttgcagctgggagcgggcgaacgagcga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggtgcagttcactacccccggggttgccgcttgcagctgggagcgggcgaacgagcga 500

                                                                       
Query: 301 acgaccgagccagccagcctgcgagcggcggctgccacccaactccggctgtacgggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgaccgagccagccagcctgcgagcggcggctgccacccaactccggctgtacgggagg 560

                                                                       
Query: 361 tagggggcacagagggctggcaccccggcgcggggcggcgcggcgcccgcagtgaccagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagggggcacagagggctggcaccccggcgcggggcggcgcggcgcccgcagtgaccagg 620

                                                                       
Query: 421 ggaatgcccggcgagccgctccagtggagggagggctgcagctcctgggggtcacttact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaatgcccggcgagccgctccagtggagggagggctgcagctcctgggggtcacttact 680

                                                                       
Query: 481 ccaactgaggggtcggcggggtaggggagaagagggggaggtgccaggcacgagtacagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaactgaggggtcggcggggtaggggagaagagggggaggtgccaggcacgagtacagg 740

            
Query: 541 a 541
           |
Sbjct: 741 a 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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