BAC Information

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BAC

Clone NameMSMg01-302D23
Chromosome4 (Build37)
Map Location 150,684,335 - 150,843,886
singlet/doubletdoublet
Overlap geneCamta1
Upstream geneLOC384091, Rere, Slc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3
Downstream geneLOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302D23.T7 (MSMg01no302_d23.b1)MSMg01-302D23.TJ (MSMg01no302_d23.g1)
ACCAG428204AG428205
length738737
length of high quality
(start - end)		324 (44 - 367)574 (73 - 646)
definitionCHROMAT_FILE: MSMg01no302_d23.b1 PHD_FILE: MSMg01no302_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:50 2005CHROMAT_FILE: MSMg01no302_d23.g1 PHD_FILE: MSMg01no302_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,843,671 - 150,843,886)(150,684,335 - 150,684,908)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGCTTAGCTTCTAGAAAAGGCCATGTGGTCAAAATGCATGCCTGGG
ATCAGACCTCGCGATCCAGGATAATGCTAGGGCCACCATGACAGCTATGT
GAACTTCTGAAACCATCTGCCTCTCTGGATCCATCTTTGAGAGGAATGAG
AGCATGGTATCTCCTACCCATGAGTCACTGCAAGAATCAGGCAGGGTCCA
GACAGTTCCTGACATATACCAGCTAGCACCTGCCAGTCCTTTTGGGATAC
AGGTCACCTCCAGATCCACCAGAGATGTTTTTGAAGTCATGAATGACACT
CTCACGAGTCATTTAGATGGGTCCATAACGGGACACGTCACAGTCAAGGT
TCCCTCTCTCCTGGGCAGGCAGGCACAGAAAAAAATAGAAACATAGAGAG
ACAGTGAAGAGAGAGCTGGGCTGGGGTAGCAGGTCGTGCCAAGGGGTCGG
GGAAGAAGTGTCAGAGAAGTGACATGGTGGGGAGAGGAAGAACTAGTGAC
TGTTGGAGACAGGCCCTGGAGAACCAACCAAACAGGACTTGGGTCTTTGT
CCAGTGGACTTGGGTTTATATGACACTATGCACAGGGACACCGAGGCCTA
AGTGCATACTCTGCTGGCAGTAGGGATGAGTGGGTCACAGGGCTTCAAGA
CATGCCATACAAGAGTGGGAATCTAAGCTGACACCAGA

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGACCCATTGAAGCGTGGGATTTCATG
CCTTCCTGTCAGCCTGGGAGCCCAAGAGGTGGTCCCTGCAGCAGGTGTCA
TTTATCAGGGCTGTGCAGAGAGAGAACCCCATGCCTGTGCCTGCTGCCTG
TGAGGGAAACCATCAATCTTCGTGGCCTCCTCCTCACCCCAGAATTTGCT
CAGGGAAGGAGAGGAGGAAAGTGAGGAGGCCGGGCTTGTGCACCTAGGTC
TCCGCTCTGCTCTGCAAACACAGAGGGTGGTGTAAGGGGAGGGAGAAGAC
AGCCATAGAGGAGCCTGCTTTTCTGCCAGGAGGCCTCATGAGCACGGGCT
GAGTGTTTGCAGGCGCTAGGGTTAGACCTTCTTGGGTGTGACCTTGGTTT
TACACCAGCATGTGACCTTGGACAAACAGCAGAGACTTTTTGTACCCATG
CATGGGCACGGTGGGAAGCAGAGAATAGCTTTTGCCTCCTGTAGTGCTGA
ACATCTGTCTGATGTGCATCTGGAAATGCCTCAAGCCCAGCCCAGGGGTG
CCCCAGGGGAGCAATAGCTCCCCCACTGCTGTCTCCAAGGGAACAGGGGA
TGGTGGTTACCTTGCTACCCACAGGTGGCACTGAAAAGGAGAAACTGCCT
AGACCAATGAAACAAACAGGAGGAGAGACACAGGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_d23.b1 MSMg01no302_d23.b1 CHROMAT_FILE:
MSMg01no302_d23.b1 PHD_FILE: MSMg01no302_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:50 2005
         (324 letters)



>mm_chr4_150843467_150844190
          Length = 724

 Score =  387 bits (200), Expect = e-112
 Identities = 212/216 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggcttagcttctagaaaaggccatgtggtcaaaatgcatgcctgggatcagac 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaattcaggcttagcttctggaaaaggccatgtggtcaaaatgcatgcctgggatcagac 361

                                                                       
Query: 65  ctcgcgatccaggataatgctagggccaccatgacagctatgtgaacttctgaaaccatc 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 360 ctctcgatccaggataatgctagggccaccatgacagctatgtgaacttttgaaaccatc 301

                                                                       
Query: 125 tgcctctctggatccatctttgagaggaatgagagcatggtatctcctacccatgagtca 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgcctctctggatccatcttggagaggaatgagagcatggtatctcctacccatgagtca 241

                                               
Query: 185 ctgcaagaatcaggcagggtccagacagttcctgac 220
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctgcaagaatcaggcagggtccagacagttcctgac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no302_d23.g1 MSMg01no302_d23.g1 CHROMAT_FILE:
MSMg01no302_d23.g1 PHD_FILE: MSMg01no302_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:50 2005
         (574 letters)



>mm_chr4_150684135_150685108
          Length = 974

 Score = 1087 bits (562), Expect = 0.0
 Identities = 571/574 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacccattgaagcgtgggatttcatgccttcctgtcagcctgggagcccaagaggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacccattgaagcgtgggatttcatgccttcctgtcagcctgggagcccaagaggtgg 260

                                                                       
Query: 61  tccctgcagcaggtgtcatttatcagggctgtgcagagagagaaccccatgcctgtgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctgcagcaggtgtcatttatcagggctgtgcagagagagaaccccatgcctgtgcct 320

                                                                       
Query: 121 gctgcctgtgagggaaaccatcaatcttcgtggcctcctcctcaccccagaatttgctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgcctgtgagggaaaccatcaatcttcgtggcctcctcctcaccccagaatttgctca 380

                                                                       
Query: 181 gggaaggagaggaggaaagtgaggaggccgggcttgtgcacctaggtctccgctctgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaaggagaggaggaaagtgaggaggccgggcttgtgcacctaggtctccgctctgctc 440

                                                                       
Query: 241 tgcaaacacagagggtggtgtaaggggagggagaagacagccatagaggagcctgctttt 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tgcaaacacagagggtggtgtaaggggagggagaaggcagccatagaggagcctgctttt 500

                                                                       
Query: 301 ctgccaggaggcctcatgagcacgggctgagtgtttgcaggcgctagggttagaccttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgccaggaggcctcatgagcacgggctgagtgtttgcaggcgctagggttagaccttct 560

                                                                       
Query: 361 tgggtgtgaccttggttttacaccagcatgtgaccttggacaaacagcagagactttttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggtgtgaccttggttttacaccagcatgtgaccttggacaaacagcagagactttttg 620

                                                                       
Query: 421 tacccatgcatgggcacggtgggaagcagagaatagcttttgcctcctgtagtgctgaac 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacccaagcatgggcacggtgggaagcagagaatagcttttgcctcctgtagtgctgaac 680

                                                                       
Query: 481 atctgtctgatgtgcatctggaaatgcctcaagcccagcccaggggtgccccaggggagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctgtctgatgtgcatctggaaatgcctcaagcccagcccaggggtgccccaggggagc 740

                                             
Query: 541 aatagctcccccactgctgtctccaagggaacag 574
           |||||||||| |||||||||||||||||||||||
Sbjct: 741 aatagctccctcactgctgtctccaagggaacag 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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