BAC Information

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BAC

Clone NameMSMg01-302H23
Chromosome4 (Build37)
Map Location 20,392,512 - 20,392,840
singlet/doubletsinglet
Overlap geneE130310K16Rik
Upstream geneCngb3, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302H23.T7 (MSMg01no302_h23.b1)MSMg01-302H23.TJ (MSMg01no302_h23.g1)
ACCAG428370AG428371
length726721
length of high quality
(start - end)		321 (46 - 366)329 (384 - 712)
definitionCHROMAT_FILE: MSMg01no302_h23.b1 PHD_FILE: MSMg01no302_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:09 2005CHROMAT_FILE: MSMg01no302_h23.g1 PHD_FILE: MSMg01no302_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTAATTCTTAGGCAAATGGATGGAATTAGAAAATATCAGCCTG
AGTAAGGTAACCCAGTCACAAAAGAATACACATGGTATGCACTTACTGGT
AAGTGGATATTAGCCCAAAAGCTCGAAATACCCAAGATACAATTCACAGA
CCACATGAAGCTCAAGAAGGAAGATCAAAGTGTGGATGCTTTAGTCCTTC
TTAGAATGGATAACAAAATACTCCTGGGAGGAAATATGGAAACAAAGAGT
GGAGCAGAGACCAAATAAAAGGCCATCCAGTAGACTGGATCACCTGGGGA
TCCATCCAATATACAGTCACTAACCTCCCANACATTCCGGATGCCAAGAA
GTACTTGCTGGCAGGAGCCTGATATAATTGAAAAAAGAGAGTCTCTTCCA
GAACCTGACAAATATAGAGGCAGATGCTCACAGCCAACCATTGAATGGAG
CACAGGCTCCCCAATGGAGGAGTTAGAGAAAGAACTGAAGTAGCTGAAGG
GGTTTACAACCTATAGGAAGAACAACATTATCAACCAACCAGAACCCCTA
GAGCTCCCAGGGACTAAACTACCAACCAAAGAGTACATATGGAAGGACCC
ATGGCTCCAGCCTCATATGTAGCAGAGGATGGCCTTGTCAGATAACAATT
GGAGGTCCTGGGATACTTGATGCCCN

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCCATCCAATCTGTTTTTTGTTTTG
CTCTTTAAAATTATTTAAATTACTCCAAATTCATACTATGATTTGTAGAT
TATTTAAAATTGCCTTGATTTCCAAGTATTTAAGCACTTTCTAGAGATTT
TTAACCATTCTAGATTTCAAGTCACTGTTTTGTTTGTGGCAAAGAGTACT
CTGTACTATTTGTTATTGGTATTTATGAGTGACTCAGAATACAATTTTGA
TCATTTTGTTCCACAGATATTTTAATAAAATATACATTTATTTGGTCCTG
ATTGTAATACAGTATATACATTGGTCATACCGATTGCACAATTTTTATTT
CTATTTAATTGTTCCTATTTTATAGTAATAAGCACAAAACTATTATTAAA
TTCTCCATGTTTGTTTCCATCATCTCAATTTCTCTCTTTGTTTCATGTAA
TTAAACATTTGTGTTTTGATATGATTAAGTATTATTTCTCACTGATGAAT
TTATGCTCTTATACTTAGTATAAAACATCTCTTTTATGTGGATTATGATA
TTTGACTTGGGTTTTATGATATAGGACTGCAAAGATTTTCTTCTTGTTGT
CTTTTAATATCCTATTCTATCTTTTAATGTCTACTGAATGCGTACATTTA
AATATATTTACATCAGTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_h23.g1 MSMg01no302_h23.g1 CHROMAT_FILE:
MSMg01no302_h23.g1 PHD_FILE: MSMg01no302_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:09 2005
         (329 letters)



>mm_chr4_20392312_20393040
          Length = 729

 Score =  629 bits (325), Expect = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcacaatttttatttctatttaattgttcctattttatagtaataagcacaaaactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcacaatttttatttctatttaattgttcctattttatagtaataagcacaaaactat 260

                                                                       
Query: 61  tattaaattctccatgtttgtttccatcatctcaatttctctctttgtttcatgtaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattaaattctccatgtttgtttccatcatctcaatttctctctttgtttcatgtaatta 320

                                                                       
Query: 121 aacatttgtgttttgatatgattaagtattatttctcactgatgaatttatgctcttata 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aacatttgtgttttgatatgattaagtattatgtctcactgatgaatttatgctcttata 380

                                                                       
Query: 181 cttagtataaaacatctcttttatgtggattatgatatttgacttgggttttatgatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagtataaaacatctcttttatgtggattatgatatttgacttgggttttatgatata 440

                                                                       
Query: 241 ggactgcaaagattttcttcttgttgtcttttaatatcctattctatcttttaatgtcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggactgcaaagattttcttcttgttgtcttttaatatcctattctatcttttaatgtcta 500

                                        
Query: 301 ctgaatgcgtacatttaaatatatttaca 329
           |||||||||||||||||||||||||||||
Sbjct: 501 ctgaatgcgtacatttaaatatatttaca 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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