ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAA
CAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGATCTGACAG
ATATGTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCA
GCACCTCATGGTACCTTCTCTAAAACTGAACACATAATTGGTCACAAAAC
AGGCCTCAACAGATACAAAAATATTGAAATTGTCCCAGGCATCCTATTAG
ATCACCATGGACTAAGGCTGATCTTCAATAACAACATAAATAATAGAAAG
CCAACATTCATAAGGTAATTGCCNNAACCTNTCCTCAATGATACCTTGGT
CAAGGAAGGAATAAAGAAAGAAATAAAGAACTAAGAAAGAGTTTAGGGAG
AATGAAGCCACAACATACCCAAAATTATGGGACCCAATGAAAGCATTTCT
AAGAGGAAAACTCATAGCTCTGAGTTCCTCCAAAAAGAAACTAGAGAGCA
CACATTAGCAGCTTGACAACATACCCAAAAGCTCTAGACCAAAAGGAAGC
AAATTCACCCAAGAGGAGGAGACAATATCAAACTCAGGGGTGAAATCAAC
CAAGTGGAAAAAAAGAACTATTCAAAGAATCAACCAATTGAGAAGCTGGT
TCTTTGAGAAAATCAACAACAAGATAGATAAACCCTTAGCCA

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATACATTCAAGGCCCAGTTTCCTTTGC
TTCTTTCTCACTTACTTTGAGGAAGTTGATTCTGGTTACACCCAGGTCAT
CCCAAGCTCACACCCTCCAGGATTTTGTCTCCTCATCAGCCTCAGTTAAA
CACCAGGAAGTAGGATTGCTTTCTTCAATGAGTTTCTGAAGCCTCCTTTG
CTGGGTTTCCGTCAGTTTGTACCTCTCCATCCGTTGACACTGCTAGATCA
GGGCTGATGGAGGAAGACAGACCTACCTCTTCCTGAGGCAGAATTGTTGT
TTTAACCAGAACAACTGGCAAGCCTTTCCACTGATGTGACACTGTAAACC
TGGGGTATGGTGGCTCCAGCGTCTTATAACATGGAAAAGAGGGAACTTTG
GAAATGCAAGCATCAAAGTGCAGGACAATTCCCCTGCAATCTGGAGGTGG
TAGATATCAGGGAGATGTTGTATATGGTGATCCTTATTAGAAGCTTCCAC
AAGTGTTATCAAGCACAGCAACTTAAGAGATGTATGTACCTTTATTTTTA
TCATTGCTTTATTCACTGTAACAAAGAATTGAAATCAACCTAGTTGTCCA
TCAGAATAAGACTAGATAATGAAATGTGTGTGTGTATGTGTGTGTGTGTG
TGTGTGTGTTGTAATTACTTTCAGATATCCTTTCT

Query= MSMg01no302_j19.g1 MSMg01no302_j19.g1 CHROMAT_FILE:
MSMg01no302_j19.g1 PHD_FILE: MSMg01no302_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:17 2005
         (604 letters)



>mm_chr4_75510182_75511185
          Length = 1004

 Score = 1114 bits (576), Expect = 0.0
 Identities = 597/604 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacattcaaggcccagtttcctttgcttctttctcacttactttgaggaagttgattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 701 atacattcaaggcccagtttcctttgcttctttctcacttactttgaggaagtggattct 642

                                                                       
Query: 61  ggttacacccaggtcatcccaagctcacaccctccaggattttgtctcctcatcagcctc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggttacacctaggtcatcccaagctcacaccctccaggattttgtctcctcatcagcctc 582

                                                                       
Query: 121 agttaaacaccaggaagtaggattgctttcttcaatgagtttctgaagcctcctttgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agttaaacaccaggaagtaggattgctttcttcaatgagtttctgaagcctcctttgctg 522

                                                                       
Query: 181 ggtttccgtcagtttgtacctctccatccgttgacactgctagatcagggctgatggagg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggtttccttcagtttgtacctctccatccgttgacactgctagatcagggctgatggagg 462

                                                                       
Query: 241 aagacagacctacctcttcctgaggcagaattgttgttttaaccagaacaactggcaagc 300
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cagacagacctacctcttccagaggcagaattgttgttttaaccagaacaactggcaagc 402

                                                                       
Query: 301 ctttccactgatgtgacactgtaaacctggggtatggtggctccagcgtcttataacatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctttccactgatgtgacactgtaaacctggggtatggtggctccagcgtcttataacatg 342

                                                                       
Query: 361 gaaaagagggaactttggaaatgcaagcatcaaagtgcaggacaattcccctgcaatctg 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 341 gaaaagagggaactttggaaatgcaagcatcaaagtgaaggacaattcccctgcaatctg 282

                                                                       
Query: 421 gaggtggtagatatcagggagatgttgtatatggtgatccttattagaagcttccacaag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 281 gaggtggtagatatcagggagatgttgtatatggtgatccttattagaagcttccacagg 222

                                                                       
Query: 481 tgttatcaagcacagcaacttaagagatgtatgtacctttatttttatcattgctttatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgttatcaagcacagcaacttaagagatgtatgtacctttatttttatcattgctttatt 162

                                                                       
Query: 541 cactgtaacaaagaattgaaatcaacctagttgtccatcagaataagactagataatgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cactgtaacaaagaattgaaatcaacctagttgtccatcagaataagactagataatgaa 102

               
Query: 601 atgt 604
           ||||
Sbjct: 101 atgt 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)