Query= MSMg01no302_p02.b1 MSMg01no302_p02.b1 CHROMAT_FILE:
MSMg01no302_p02.b1 PHD_FILE: MSMg01no302_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:42 2005
(700 letters)
>mm_chr4_54903425_54904525
Length = 1101
Score = 1214 bits (628), Expect = 0.0
Identities = 631/632 (99%), Gaps = 1/632 (0%)
Strand = Plus / Minus
Query: 5 gaattccttaaagctcac-cggagtaaacaaggagctgatcaaggttccaggactggcat 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gaattccttaaagctcacacggagtaaacaaggagctgatcaaggttccaggactggcat 573
Query: 64 atagaaagttgtagaaagaatgtagatgtagaatgttctaagaatagataggtcccgtga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atagaaagttgtagaaagaatgtagatgtagaatgttctaagaatagataggtcccgtga 513
Query: 124 attatagttttaaaacaaccattgatggctgagattttgttgtgaggcaaaaggtttggc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 attatagttttaaaacaaccattgatggctgagattttgttgtgaggcaaaaggtttggc 453
Query: 184 actttatagcctctgaagggcagcaggttcacaaggctgaacgttttattaattgtttgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 actttatagcctctgaagggcagcaggttcacaaggctgaacgttttattaattgtttgg 393
Query: 244 aaatggcactagcccaggagctggggcatctatagcgttgtcccatccaggtgtgtggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaatggcactagcccaggagctggggcatctatagcgttgtcccatccaggtgtgtggaa 333
Query: 304 gttgtgatgtaccaagtcaggctagatgaaaccattcatggattaactgttcacccgtgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gttgtgatgtaccaagtcaggctagatgaaaccattcatggattaactgttcacccgtgg 273
Query: 364 taatcatgttccctttactacactcttacaagtggcccttacacatggatgagaggggat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taatcatgttccctttactacactcttacaagtggcccttacacatggatgagaggggat 213
Query: 424 gttaatcattttatcagaacagggtctcaagtagctcaggctggcttgagcctgctagct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gttaatcattttatcagaacagggtctcaagtagctcaggctggcttgagcctgctagct 153
Query: 484 attctgagatgaccttgaacttctgatcctcttgcatccatctcttaagtgcttgggtta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 attctgagatgaccttgaacttctgatcctcttgcatccatctcttaagtgcttgggtta 93
Query: 544 gagacttgttttatttctcaggatcaaattcagggctttgagcatgctaagcaagtatcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 gagacttgttttatttctcaggatcaaattcagggctttgagcatgctaagcaagtatcc 33
Query: 604 taccaattgaactacttcaaaagtcaagtttt 635
||||||||||||||||||||||||||||||||
Sbjct: 32 taccaattgaactacttcaaaagtcaagtttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1101
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1091
Effective search space: 752790
Effective search space used: 752790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_p02.g1 MSMg01no302_p02.g1 CHROMAT_FILE:
MSMg01no302_p02.g1 PHD_FILE: MSMg01no302_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:42 2005
(587 letters)
>mm_chr4_54741167_54742153
Length = 987
Score = 1104 bits (571), Expect = 0.0
Identities = 583/587 (99%)
Strand = Plus / Plus
Query: 1 aaggaagtgggaaatcgtgtaatgggagagatctaatagggaagcagaaatgaggactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaagtgggaaatcgtgtaatgggagagatctaatagggaagcagaaatgaggactaa 260
Query: 61 ccggaagaaaaaatcatttgatggcaagaaaatggatgtagggatagtaggggggaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccggaagaaaaaatcatttgatggcaagaaaatggatgtagggatagtaggggggaagtg 320
Query: 121 aataaaaaaagcatatatatgcatatataaattgatggaccccattactttgattactaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaaaaaagcatatatatgcatatataaattgatggaccccattactttgattactaa 380
Query: 181 atgcaatgaagaatcaggcaatagagaatcagaatgtggtcaggctgttgaaaggccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcaatgaagaatcaggcaatagagaatcagaatgtggtcaggctgttgaaaggccttt 440
Query: 241 gcttcactgactctgatctcttactatatgagactcctatcttcatgagattccacttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttcactgactctgatctcttactatatgagactcctatcttcatgagattccacttgg 500
Query: 301 attagtccatgtcgtcctagtgacactgttacctacttaacacatagaagatggaggtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attagtccatgtcgtcctagtgacactgttacctacttaacacatagaagatggaggtct 560
Query: 361 gtggcagtcaaggctctatgccttctggttctaatttgtccgactcccccacttttctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggcagtcaaggctctatgccttctggttctaatttgtccgactcccccacttttctca 620
Query: 421 gggctctagtaattctcactgtaggtcttgcctctcgttgtccgaggccttcagctgtac 480
|||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct: 621 gggctctagtaattctcactgtagttcttgcctctcgttgtcccaggccttcacctgtac 680
Query: 481 attcatatctcgtgggagcattttcattccccagtgaatatgtctttaaaggtcttaccc 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attcatatctcgtgagagcattttcattccccagtgaatatgtctttaaaggtcttaccc 740
Query: 541 actctcatcacctccatgaattctttcttcatcttttttttactgtc 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actctcatcacctccatgaattctttcttcatcttttttttactgtc 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
