Query= MSMg01no303_b05.b1 MSMg01no303_b05.b1 CHROMAT_FILE:
MSMg01no303_b05.b1 PHD_FILE: MSMg01no303_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
(356 letters)
>mm_chr4_25079514_25080269
Length = 756
Score = 619 bits (320), Expect = 0.0
Identities = 344/352 (97%), Gaps = 2/352 (0%)
Strand = Plus / Plus
Query: 6 ggaattcataaccactatgcctcaagatttccatgccaagatccagatcagtaa-attgt 64
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct: 206 ggaattcataaccactatgcctcaagatttccaggccaagatccagatcagtaagat-gt 264
Query: 65 atctcccagcctccaggttaggatcactgctgagccttccaattctggattgtagttcat 124
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 atctcccagcctccagattaggatcactgctgagcctttcaattctggattgtagttcat 324
Query: 125 tcctgatatagtcaagttgacaaccaggaatagccactacagtgagcatgctcatgcaca 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 tcctgatatagtcaagttgacaaccaggaatagccactacagtgtgcatgctcatgcaca 384
Query: 185 tatgagagtgcacacacatagcagcagcacatatgggaatgcttgcatgcacatgcaggg 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgagagtgcacacacatagcagcagcacatatgggaatgcttgcatgcacatgcaggg 444
Query: 245 cagaggtattatgtatcagatgttgttcatccagaatttagcctgggattttctgatcag 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 cagaggtattatgtatcagatgttgttcatcctgaatttagcctgggattttctgatcag 504
Query: 305 gctagtctgtctggctagtaagcctagggaatcatgcctctctgcttcatca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctagtctgtctggctagtaagcctagggaatcatgcctctctgcttcatca 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no303_b05.g1 MSMg01no303_b05.g1 CHROMAT_FILE:
MSMg01no303_b05.g1 PHD_FILE: MSMg01no303_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
(530 letters)
>mm_chr4_25272487_25273416
Length = 930
Score = 940 bits (486), Expect = 0.0
Identities = 519/530 (97%)
Strand = Plus / Minus
Query: 1 tgtctctaattaacagtggaaaagagcagtttcttattaacacactcggcaagcaagatt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 638 tgtctctaattaacagtggaaaagagcagtttcttatcaacacactcggcaagcaagatt 579
Query: 61 ctgtttagtggctcttcaaatgactgatgaaagcatttttttaaaaaaatgaatcacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctgtttagtggctcttcaaatgactgatgaaagcatttttttaaaaaaatgaatcacaac 519
Query: 121 ttctgcttagattacagaatcttatcaggccacagaggaaggtttttaattattgcctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttctgcttagattacagaatcttatcaggccacagaggaaggtttttaattattgcctga 459
Query: 181 aatccagtgatgagggactttggaaaggtttttgaaagagttggctgtgccaaatgcccc 240
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 458 aatccagtgatgagggactttggaaagggttttgaaagagttggctatgccaaatgcccc 399
Query: 241 accctccctccttcatcccctttcgactaaagcaacagtgtatgcccaactctgatgact 300
|||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 398 acccgccctccttcatcccctttcgactaaagcaacagtgtatgctcagctctgatgact 339
Query: 301 acgtcagaaacatgactacagcctctgtctctcactcgcagctttaacttaggtctacag 360
| |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 338 atgtcagaaacatgacgacagcctctgtctctcattcgcagctttaatttaggtctacag 279
Query: 361 aggtgatcttttccaagacttttagaaagaataaaaagtatatacttgtaccatccattc 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aggtgatcttttctaagacttttagaaagaataaaaagtatatacttgtaccatccattc 219
Query: 421 aaataccaagcattattcaaatatttaaattattaaaatattcaaccatctggaaaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aaataccaagcattattcaaatatttaaattattaaaatattcaaccatctggaaaaata 159
Query: 481 ataattggagaaatgctgaatagcttttaaaataataacaaatcattcca 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ataattggagaaatgctgaatagcttttaaaataataacaaatcattcca 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
