BAC Information

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BAC

Clone NameMSMg01-303D11
Chromosome4 (Build37)
Map Location 106,683,257 - 106,844,096
singlet/doubletdoublet
Overlap geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11
Downstream geneTmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303D11.T7 (MSMg01no303_d11.b1)MSMg01-303D11.TJ (MSMg01no303_d11.g1)
ACCAG428875AG428876
length785746
length of high quality
(start - end)		347 (37 - 383)477 (68 - 544)
definitionCHROMAT_FILE: MSMg01no303_d11.b1 PHD_FILE: MSMg01no303_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:04 2005CHROMAT_FILE: MSMg01no303_d11.g1 PHD_FILE: MSMg01no303_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,843,755 - 106,844,096)(106,683,257 - 106,683,733)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTC
CTTACCTTCAGACCTGAAACTATTATAACAGTTTTGCTTCGTTTTACTTT
CTTTGCATTGAGGATGGCAGATAAAGTAAGAAAAAGTTATTCGGACTCTC
AAGTTATAGTCTGGTGAAAAAGGTAGTCTTGTTCATGAGTGTGTGCAGAA
GTATAGGTACAGTAAATGGGACACAAAGAGGAATGTGGTCCAAGGCTGTG
AAAGGCTTCAAGGAAAAATTGATGCTGCAGAGAGTCTCTGAAAGACAATG
GCTGTCAGGCTAATGAAGGCCATCCTAGGGAGTGGGTGTGAAGTGCCGCA
TTGGCAGCTGCTGATTGTATCTAGAGACTGATAGGATCGCAAGTCATGGA
AGACCTCCTCCCGTTTGTCTGCTTGCCTGTTTGTCTGCTTTCTCCATGCA
TGCGTTTCCCAGTTGCACTCTTTTCTTTCTCGTCTACCCTTTTTGTCCTA
CCATTTGTCCATTTTTTCCCTTACATTACACTAGTTTCCTTTCTTCCTCT
TATTTTTCTTATACTATCGCGTTTAACATATTGTCCTCCGCTTAACTCTT
CATATTAAAATATTATTTAAGTTCTCTATTTACCATATCTTATCTTCACT
CACCCATTTTCCTAACTTTTCTTTTTTTTTTCTTTTTTCACCTTTCCCCT
CTCCCCTTTCATTTTCTTTACCCTTTTTTTTTAACTTTCATATTTATTTC
TCTTTTTCCTTCGCTTTTTTTCTTTTTCCCCCCTT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACAGAAGCCCAGGCAGGAATGCTGAGTTGGA
CCAGAGAGGCCTCATGCACAGTACAGGATAGAGCCTTGGAGTCATGAGAA
AAGATAGGATTGGCACCCCATGGGAACATCAGGGCTCCTCTTCCCCTTTC
CTGGGAGGTGACTTGGGAGTCACTTCTGTTTTGCAAGATTGCATATTTTA
GTTCATGGTAAATCTGGGAAGAGGAGGGTTAGGGCACATACTCACCAAAA
AAAGGACCTTGGTGAAATTTGCTTACTCCATAAAACAGAAGTAGCTGAGT
GTTGATCAGTTGGCAGCGAGAAGAGAGATATAGGGACGACAGTTCAGGAC
ATCAGATGGCCACACATATATCTGCCTGTGTGTGTTGCCGGCACGCCACC
AGAACTGGGGCCATGTCTAAGGTATGGAGACTGGAACGGCCTCAGAAGTC
TTGGGTTAAGAGTACAGACATCACGGGCTGGTGAGATGGCTCAATGGGTA
AGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACC
ACATGGTGGCTCACAACCATCTGTAACAAGATCTGATGCCCTCTTCTGGA
GTGTCTGAAGACAGCTACAGTGCACTTACATATAACAAATAAATCCTTTA
AAAAAATACAAAAGAGTACAGATATCTTCTATAGAGGCTGACTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_d11.b1 MSMg01no303_d11.b1 CHROMAT_FILE:
MSMg01no303_d11.b1 PHD_FILE: MSMg01no303_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:04 2005
         (347 letters)



>mm_chr4_106843551_106844298
          Length = 748

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtccttacctt-cagacctgaaactattataacagttttgcttcgttttactt 63
           |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaattctgcccttactttccagacctgaaactattataacagttttgcttcgttttactt 487

                                                                       
Query: 64  tctttgcattgaggatggcagataaagtaagaaaaagttattcggactctcaagttatag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tctttgcattgaggatggcagataaagtaagaaaaagttattcggactctcaagttatag 427

                                                                       
Query: 124 tctggtgaaaaaggtagtcttgttcatgagtgtgtgcagaagtataggtacagtaaatgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctggtgaaaaaggtagtcttgttcatgagtgtgtgcagaagtataggtacagtaaatgg 367

                                                                       
Query: 184 gacacaaagaggaatgtggtccaaggctgtgaaaggcttcaaggaaaaattgatgctgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gacacaaagaggaatgtggtccaaggctgtgaaaggcttcaaggaaaaattgatgctgca 307

                                                                       
Query: 244 gagagtctctgaaagacaatggctgtcaggctaatgaaggccatcctagggagtgggtgt 303
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 306 gagagtctctgaaagacaatggctgtcaggcaaaggaaggccatcctagggagtgggtgt 247

                                                     
Query: 304 gaagtgccgcattggcagctgctgattgtatctagagactga 345
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gaagtgccgcattggcagctgctgattgtatctagagactga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 748
Length adjustment: 9
Effective length of query: 338
Effective length of database: 739
Effective search space:   249782
Effective search space used:   249782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_d11.g1 MSMg01no303_d11.g1 CHROMAT_FILE:
MSMg01no303_d11.g1 PHD_FILE: MSMg01no303_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:04 2005
         (477 letters)



>mm_chr4_106683057_106683933
          Length = 877

 Score =  870 bits (450), Expect = 0.0
 Identities = 471/478 (98%), Gaps = 2/478 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacagaagcccaggcaggaatgctgagttggaccagagaggcctcatgcacagtacagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tcacagaagcccaggcaggaatgctgagttggaccagagaggcctcatgcacagtatagg 260

                                                                       
Query: 61  atagagccttggagtcatgagaaaagataggattggcaccccatgggaacatcagggctc 120
           |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 261 atagagccttggagtcatgagaaaagataggattggca-cccatgggaacgtcagggctc 319

                                                                       
Query: 121 ctcttcccctttcctgggaggtgacttgggagtcacttctgttttgcaagattgcatatt 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 ctcttcccctttcctgggaggtgacttgggaggcacttctgttttgcaagattgcatatt 379

                                                                       
Query: 181 ttagttcatggtaaatctgggaagaggagggttagggcacatactcacc-aaaaaaagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 ttagttcatggtaaatctgggaagaggagggttagggcacatactcaccaaaaaaaagga 439

                                                                       
Query: 240 ccttggtgaaatttgcttactccataaaacagaagtagctgagtgttgatcagttggcag 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccttggtgaaatttgctcactccataaaacagaagtagctgagtgttgatcagttggcag 499

                                                                       
Query: 300 cgagaagagagatatagggacgacagttcaggacatcagatggccacacatatatctgcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cgagaagagagatatagggacgacagttcaggacatcagatggccacacatatatctgcc 559

                                                                       
Query: 360 tgtgtgtgttgccggcacgccaccagaactggggccatgtctaaggtatggagactggaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtgtgtgttgccggcacgccaccagaactggggccatgtctaaggtatggagactggaa 619

                                                                     
Query: 420 cggcctcagaagtcttgggttaagagtacagacatcacgggctggtgagatggctcaa 477
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 620 cggcctcagaagtcttgggttaagagtacagacatcaggggctggtgagatggctcaa 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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