BAC Information

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BAC

Clone NameMSMg01-304H09
Chromosome4 (Build37)
Map Location 55,720,350 - 55,890,584
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304H09.T7 (MSMg01no304_h09.b1)MSMg01-304H09.TJ (MSMg01no304_h09.g1)
ACCAG429736AG429737
length1,3371,327
length of high quality
(start - end)		688 (133 - 820)771 (92 - 862)
definitionCHROMAT_FILE: MSMg01no304_h09.b1 PHD_FILE: MSMg01no304_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:08 2005CHROMAT_FILE: MSMg01no304_h09.g1 PHD_FILE: MSMg01no304_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,720,350 - 55,721,037)(55,890,144 - 55,890,584)
sequence
NNNCCGTTTTTNNNNNNNNNTCATTTGGCGCTATAGACTCCTATAGGGAG
AGGATCCGCGGAATTCTCATTGGATTTTGTAACTATAAAACCCTAGGATT
TCCCTTTAACCCTTCAATCCCACGTTCAACTAAAGTGGTGGTGAAAGGTT
AAAGTGTCATCCAAAGAACGTCCACTCATCTCTGCGGTGAGCCAGCATGG
TCCCAGGAAGTCATGTGCTCATGCTATGTAGCTCTTCCACCTGCCTTGTT
GCCTAAGTGATTCGCCTGGTCTGAAATGATATATGGCTGCATAGTTGGGA
AGAAAGCTTTTATTTCTAAGGTTCTCAGCTCCTTATTCTCTACTCATTAC
AAAACCTGGGTGAAAACAGGATTGGGCCTCAGCAAAAGTGACACTTGTAA
ATCTTAGGATCTCATACTAGCCAGGTACTTTTCATCATTTAACAACTCTC
TGAGGCTTCTAAGGATGGTTGTTGTAATCTCTGCCTGACAAAGGGGGAAA
GTGAGGCTGAGGTGAAAAGTGGTAGACTGAGTATGAAAACATGATGTATT
CTCTTCATATATGTAGTCCCTGGGAGAGAGTGATTCAGGAAGCGGCCAAT
CGCATCCAGTGTGGGGGAGGAGCATCTGCTGAGCAGATGCCGGGACCCAC
TGGCCAGATGCCACATGGATATGGCTTTTCTTGGCTGGGATGGCTATCTC
GAGACAAGCTGCATGGCAATCTCATGTTTTCACTGTGAGTCATTCTGTTA
CACTCTGGAGAATTTATATAGCCAAGGAGCCATAATGATCCACCCAGGGC
TCCTACCTTTCTATGTCCCAACAATCCAGAAGAGCAATTCTGTTATGAAA
CGTCCTCCCAGTGCCCCCCGGAAGTTAAGGGAAATCATGTGATCCACGTT
AATCAATACACAGGTAAAAAAATAGATGCTTAACGGATCCCGTAGACTTG
GTTTCCTGAACACTCCTCTTTTTGAAACCAAAGTTCATTTTCTTTTTAAA
TTGAAAAAAATGCTATGTTGCTGTGGTAGTGGTTGTGGTTACTCTAAAGG
ATTTGCTTGTAACCCTGTAACTCTTAAAAACAAAAATCTTTTTAAAACTA
TCATGTTCTGTTTTCCCCTTTTTTTTGCCATTATAAACTTCACCCTACTT
AAATATATTCCCCATCATTGGAATAAAATCTCCCAAAAACTTAAATTTCT
AACCGTTGGATTCTCTACTTTATCTTTTATTATCTCTATGTTCTTTCTTT
CTCTTGATATTCAATCTAAAATCATATTCTCCATACTTCACTATTTCCTC
ACACTCTTCTTCTTAAAAATACTTTATTCGTTCTATC

NCCCGCTCTTNNNNNNNCGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAGGGGATTCTGTTTTG
ATCCTGAGTGGTACAGAGCCCTTGAGGACGTCAGATGATACACTTAGACC
CTGTGTTTGACTTCAGAGTACAGGATTAGGGTGGGGAGCCTCCAGACAGA
GCAGAGAGGGCTTCTATGTAATCCCTGACCCAATTACTTCACTCTTAGGA
TTGTCAGACTGAATACATGAAAACACTGGAGTTTGAACCTCAGTGTCTTA
GTTAGGGTTTTACTGCTGTGAACAGATGCCCTAACCAAGGCAACTCTCAT
AAGGACATTTAATTGTTGCTGGCTTACAGCAATTGGTTCAGCAGTTCAGT
TCATTATCATCATGGTAGGAGCATGGCAGTGTCCAGGCAGGCATGGTACA
GGAGGTGCTGAGAGTTCGATATCTTCATCTGCAGGCTGCTAGGAGAAGAC
TGGCTTTCAGGTAGCTAGTATGAGCATCTTAAAGTCCTTGCCCACAGTGA
CACACCTCTTCTACAAGGCTATACTGCCTAATGGTGTCACACTCTGGGCC
AATCATATACAAACCATCACACTCAGTTTAAAGGGAAGTGCTTTTTCAGG
GTAGCACATGGACTCAATCTTTGTTTCTCTGATTTTGAATTTTTCTTTCT
GGCTCGTGTTTTGTCTGACAGCATCATTTACTCTTCTCACTACATTTATT
CACCTATAANATTAGAGTTAAAAAGCCCACCTTGCCTGTGTAATTATAGT
TGAAGTCAATAGGATGTGGAAAGGGGTCTTGTGTATAGCTTTCCTTCCTC
CCTGCTTTGCGATTGTCATGCATGTCTACCAAATAGCAAAATAGATCTGG
AGAACAGACCCTCTTCAGTAGATGGCTTTTTGGGAAACCTGGCTCCTCCA
CCCATGTGGGACTTGGAGAAAACACTGAGGTGGATACCTTGAAACTGAAA
AGCCAATTTATCTCCCTGGGGACCGGGCCGGAAATTTTTTTTTTGCCCCC
CGGTTTGAAAATGAACGGGTGGAGGGGGGGTAAACATCTTTTTTTTCCTA
ATTTTTAATAGAGGATTTTTTTCTTGTGGGAACAAAGTTAGGCACGGGGG
GAGTTCTTTTACCCTTTGTTTCTGTAGAGAAAAAATTTGTGGTCAATAAA
TCCCCACTTGAGATTTGCTGTCTGTTTCTTTCTCACAATAAACAACCCCA
CCTCTTCCTTCATTCTCAGTTATTCATGACTTCTCTATCTGTATTATTTC
TCTAATTTGTTTCATTCCTTCTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_h09.b1 MSMg01no304_h09.b1 CHROMAT_FILE:
MSMg01no304_h09.b1 PHD_FILE: MSMg01no304_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:08 2005
         (688 letters)



>mm_chr4_55720150_55721237
          Length = 1088

 Score = 1330 bits (688), Expect = 0.0
 Identities = 688/688 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtggtggtgaaaggttaaagtgtcatccaaagaacgtccactcatctctgcggtgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtggtggtgaaaggttaaagtgtcatccaaagaacgtccactcatctctgcggtgagc 260

                                                                       
Query: 61  cagcatggtcccaggaagtcatgtgctcatgctatgtagctcttccacctgccttgttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcatggtcccaggaagtcatgtgctcatgctatgtagctcttccacctgccttgttgc 320

                                                                       
Query: 121 ctaagtgattcgcctggtctgaaatgatatatggctgcatagttgggaagaaagctttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaagtgattcgcctggtctgaaatgatatatggctgcatagttgggaagaaagctttta 380

                                                                       
Query: 181 tttctaaggttctcagctccttattctctactcattacaaaacctgggtgaaaacaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctaaggttctcagctccttattctctactcattacaaaacctgggtgaaaacaggat 440

                                                                       
Query: 241 tgggcctcagcaaaagtgacacttgtaaatcttaggatctcatactagccaggtactttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggcctcagcaaaagtgacacttgtaaatcttaggatctcatactagccaggtactttt 500

                                                                       
Query: 301 catcatttaacaactctctgaggcttctaaggatggttgttgtaatctctgcctgacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcatttaacaactctctgaggcttctaaggatggttgttgtaatctctgcctgacaaa 560

                                                                       
Query: 361 gggggaaagtgaggctgaggtgaaaagtggtagactgagtatgaaaacatgatgtattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggggaaagtgaggctgaggtgaaaagtggtagactgagtatgaaaacatgatgtattct 620

                                                                       
Query: 421 cttcatatatgtagtccctgggagagagtgattcaggaagcggccaatcgcatccagtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcatatatgtagtccctgggagagagtgattcaggaagcggccaatcgcatccagtgt 680

                                                                       
Query: 481 gggggaggagcatctgctgagcagatgccgggacccactggccagatgccacatggatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggggaggagcatctgctgagcagatgccgggacccactggccagatgccacatggatat 740

                                                                       
Query: 541 ggcttttcttggctgggatggctatctcgagacaagctgcatggcaatctcatgttttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcttttcttggctgggatggctatctcgagacaagctgcatggcaatctcatgttttca 800

                                                                       
Query: 601 ctgtgagtcattctgttacactctggagaatttatatagccaaggagccataatgatcca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgtgagtcattctgttacactctggagaatttatatagccaaggagccataatgatcca 860

                                       
Query: 661 cccagggctcctacctttctatgtccca 688
           ||||||||||||||||||||||||||||
Sbjct: 861 cccagggctcctacctttctatgtccca 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no304_h09.g1 MSMg01no304_h09.g1 CHROMAT_FILE:
MSMg01no304_h09.g1 PHD_FILE: MSMg01no304_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:08 2005
         (771 letters)



>mm_chr4_55889414_55890584
          Length = 1171

 Score =  824 bits (426), Expect = 0.0
 Identities = 437/441 (99%)
 Strand = Plus / Minus

                                                                        
Query: 331  catggcagtgtccaggcaggcatggtacaggaggtgctgagagttcgatatcttcatctg 390
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1171 catggcagtgtccaggcaggcatggtacaggaggtgctgagagttcgatatctttatctg 1112

                                                                        
Query: 391  caggctgctaggagaagactggctttcaggtagctagtatgagcatcttaaagtccttgc 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 caggctgctaggagaagactggctttcaggtagctagtatgagcatcttaaagtccttgc 1052

                                                                        
Query: 451  ccacagtgacacacctcttctacaaggctatactgcctaatggtgtcacactctgggcca 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 ccacagtgacacacctcttctacaaggctatactgcctaatggtgtcacactctgggcca 992

                                                                        
Query: 511  atcatatacaaaccatcacactcagtttaaagggaagtgctttttcagggtagcacatgg 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  atcatatacaaaccatcacactcagtttaaagggaagtgctttttcagggtagcacatgg 932

                                                                        
Query: 571  actcaatctttgtttctctgattttgaatttttctttctggctcgtgttttgtctgacag 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931  actcaatctttgtttctctgattttgaatttttctttctggctcgtgttttgtctgacag 872

                                                                        
Query: 631  catcatttactcttctcactacatttattcacctataanattagagttaaaaagcccacc 690
            ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 871  catcatttactcttctcgctacatttattcacctataaaattagagttaaaaagcccacc 812

                                                                        
Query: 691  ttgcctgtgtaattatagttgaagtcaataggatgtggaaaggggtcttgtgtatagctt 750
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 811  ttgcctgtgtaattatagttgaagtcaataggatgtggaaaggggtctcgtgtatagctt 752

                                 
Query: 751  tccttcctccctgctttgcga 771
            |||||||||||||||||||||
Sbjct: 751  tccttcctccctgctttgcga 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 1171
Length adjustment: 10
Effective length of query: 761
Effective length of database: 1161
Effective search space:   883521
Effective search space used:   883521
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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