BAC Information

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BAC

Clone NameMSMg01-304O22
Chromosome4 (Build37)
Map Location 112,322,022 - 112,322,703
singlet/doubletsinglet
Overlap genenone
Upstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540
Downstream geneLOC100040581, A030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607, LOC242627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304O22.T7 (MSMg01no304_o22.b1)MSMg01-304O22.TJ (MSMg01no304_o22.g1)
ACCAG430064AG430065
length1,3151,281
length of high quality
(start - end)		739 (91 - 829)719 (92 - 810)
definitionCHROMAT_FILE: MSMg01no304_o22.b1 PHD_FILE: MSMg01no304_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:13 2005CHROMAT_FILE: MSMg01no304_o22.g1 PHD_FILE: MSMg01no304_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCGACCTNNNNNNNATCAGTGCGCGCTAXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTGAGGAGCCTCAGTACCATTTAAAATAAATAAAT
ACATAATATACTTATGCGATATTCCAACCGACTAGTAAGAGCAAGAATCA
TGCTGCTTGAGGAGAAAGGATACCATCTTCCAATAACCTCTTAGGCTTGA
CACAAACAGAATCATCCCAAAATCAAGCAGGCCAAGTTTCTTCTCTATTG
TTTTTGTACATGTAGGAAGTATGGAGTGATAGAAACCTGCAAAAAAGCCT
ACCTTCAAGGTGTAATCTATGGTTCCTCTAATGTCTGCAACTATCCTGAG
TTTTTCCTCTTTTCTCAGTCCCAGTTTCAGATCAACATTTTGAATTGGAC
ACTTTGTGGCGTGAAGATATTAGTGTGATCCTGTGTGTGCTGATTGTGTT
TATCATCAAGCTCATTTCTTTTATTTACTTCAGATTAGAAGGTAAATATG
ATGGCAATGGTGGCAACTCAGAAAAGTAATGCACAGATGTCTAGAAGGTG
ACCATTCTGGTCATTTTGCATTAGTAACTATAAGAAAAACTAAATGAAGA
ACTGTGTTGAGTAATGATTGGTAGATTGTAACGTCCATTTTGGGTATATT
GGGGATTTCACTTGTATATATGGGAATGTCTCTCAGATTACTGACTCTCC
AAGATCATACTATAGAATTATGCTAACACACACGCATACACATACACATA
CATACACACACACACACACACACACACACACACACACACACACACACACA
CACACACAGAGTTACTTAATCTATACACCCTGGAAAGCCTCTGAATGTTG
AGCTTTTGCAAAAACTTTATGATTTTTCTTAAAAATTGACCAATGACAGT
TTATAGAAAAATTTAAGGCTACAAACATTAAACCAAGCTTTCTGTCTGTT
AATATGTGGGGGGAAAATAATTCCCCCCCATGAACATCTTTGGTTGGGGA
AAGAGCTCTGAGAACCCCCAGGGCCATATAAATGAATCTGTGGTCTTTCT
GTGGGGGCCTAATGCAAAAACCGCATCCCACCCCCCACTCTCCAAAAGGT
CCCGAAACCACCCCCCTTGGATTTAAACCCGATCTGTTGAAATAAGGCCG
GGGGGCTCCCCAAAAACCCCTAAAACTTTTGGGGAAACCATAACCTTAAA
GCCCAAAAAACCGTTTGGAGATTTGAAAGCCAACTTGGGGGGNTTTATTC
GTCCCCCGCACTCTCTGAGAATTTATTTTTTGGGGGGGCGTGCAAAAAAC
GACTCAAACTGATTA

NNNCCCAATTTNNNNNNNACGCATGGAGGCTGGGGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTACCTGAGGAACACA
GAATGGCTGAGAAGCACCTGACCAAAGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTGCACCTCACACAAGTCAGAATG
GCTAAGATAAAAAACGCAGGTGACAGCAGATGCTGGCGAGAATGTGGAGA
AAGAGGAACACTCCTTCATTGTTAGTGGGATTGCAAGATTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGACCCAGCAATACCTCTCCTGGTCATATGTCCAGAAGATGTTCCAAC
TGGTAAGAAGGACACATGTTCCTTCATAGCAGTTCATAGCAGCCTTATTT
ATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCTCTCAACAGAGGAATG
GATACATTTGGACAGTCTTGTTGTGGACTCTTTAAGGGTAAAGCTTCTAA
TATTACTAAGAGACATGATCTCACAGTAAACTCCCTGATCTGAGTCTTAC
AACCTTTCTGTTATCTCTTCTCCAGTGTGTTTTGAACCTTCCATGTGGGA
GTGTTTTGTAGATGTATGCATTCAGATTTAGCTCCACAGATATGCATTTT
GATTGGTTGTGGTTTTCTGTAATGGTCTCAGCCTATTGCATAGACAGACT
TCCTTGATGAGGAGTGAAGAATACACTTATCTGTGAGCATAAGGACAAAT
ATGTATAGTATGTTCAAAGATTATGCTCCTGACAAGGGTTTCTATTCCTG
CTCCAAAAAATATAACCCACAAACAAAGTTGGGGATTGAAAAGGTTATTT
CACTTCCCCTTCTTAAATGGGGGGCTCCTCCCCAGGAGGTCAGAAAAAAA
ATTCTTTCTTGTTCTGAAAATAGAAATGTTTGTGAACCCCTCGTAGGAAG
TGCCTTATGGCCTTGCTTCCTCTCCTCGGTTCTTTCTAACCCTTACATCC
CATCCAAGAAGTTACTCCATAAAAACCTCCCCCTTCTTCCCCATTATATA
ATCTTTCCCAACTCACACAGATTGTCCCACCATTAGTTTACCTCTACACC
TTTCTACCACCTTCTTATTCACCTGTCCTACTTACAATCGACAACATNCA
CCCCAAAATTACATCCTACTACATTTCATATACCTTTGCTAAATAATCCC
ATNTCATATTATATTAATTTAAACTTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_o22.b1 MSMg01no304_o22.b1 CHROMAT_FILE:
MSMg01no304_o22.b1 PHD_FILE: MSMg01no304_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:13 2005
         (739 letters)



>mm_chr4_112321822_112322960
          Length = 1139

 Score = 1147 bits (593), Expect = 0.0
 Identities = 662/687 (96%), Gaps = 6/687 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaataaatacataatatacttatgcgatattccaaccgactagtaagagcaagaatca 60
           ||||||||| |||||||||||||||| ||||||| ||| ||||||||||||||||| |||
Sbjct: 201 ataaataaacacataatatacttatgtgatattcaaactgactagtaagagcaagagtca 260

                                                                       
Query: 61  tgctgcttgaggagaaaggataccatcttc-caataacctcttaggcttgacacaaacag 119
           |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 261 tgctgcttgaggagaaaggataccatcttctca-taacctcttaggcttgacagaaacag 319

                                                                       
Query: 120 aatcatcccaaaatcaagcaggccaagtttcttctctattgtttttgtacatgtaggaag 179
            |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatcatcccaatatcaagtaggccaagtttcttctctattgtttttgtacatgtaggaag 379

                                                                       
Query: 180 tatggagtgatagaaacctgcaaaaaagcctaccttcaaggtgtaatctatggttcctct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatggagtgatagaaacctgcaaaaaagcctaccttcaaggtgtaatctatggttcctct 439

                                                                       
Query: 240 aatgtctgcaactatcctgagtttttcctcttttctcagtcccagtttcagatcaacatt 299
           | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 attgtctgcaactatcctgagtctttcctcttttctcagtcccagtttcagatcaacatt 499

                                                                       
Query: 300 ttgaattggacactttgtggcgtgaagatattagtgtgatcctgtgtgtgctgattgtgt 359
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 ttgaattggacactttgtggcttgaagatattagtgtgatcctgtgtgtgctgatcgtgt 559

                                                                       
Query: 360 ttatcatcaagctcatttcttttatttacttcagattagaaggtaaatatgatggcaatg 419
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttatcatcaagctcatttcatttatttacttcagattagaaggtaaatatgatggcaatg 619

                                                                       
Query: 420 gtggcaactcagaaaagtaatgcacagatgtctagaaggtgaccattctggtcattttgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtggcaactcagaaaagtaatgcacagatgtctagaaggtgaccattctggtcattttgc 679

                                                                       
Query: 480 attagtaactataagaaaaactaaatgaagaactgtgttgagtaatgattggtagattgt 539
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 680 attagtaactataagaaaaactaaatgaagaactgtgttgagtaatggttggtagattgt 739

                                                                       
Query: 540 aacgtccattttgggtatattggggatttcacttgtatatatgggaatgtctctcagatt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacgtccattttgggtatattggggatttcacttgtatatatgggaatgtctctcagatt 799

                                                                       
Query: 600 actgactctccaagatcatactatagaattatgctaacacacacgcatacacatacacat 659
           ||||||||||||||||||||||||| ||||||||||||||||||    ||||| ||||| 
Sbjct: 800 actgactctccaagatcatactatataattatgctaacacacac----acacacacacac 855

                                      
Query: 660 acatacacacacacacacacacacaca 686
           ||| |||||||||||||||||||||||
Sbjct: 856 acacacacacacacacacacacacaca 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 739
Length of database: 1139
Length adjustment: 10
Effective length of query: 729
Effective length of database: 1129
Effective search space:   823041
Effective search space used:   823041
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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