Query= MSMg01no305_p11.b1 MSMg01no305_p11.b1 CHROMAT_FILE:
MSMg01no305_p11.b1 PHD_FILE: MSMg01no305_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:33 2005
(426 letters)
>mm_chr4_29000944_29001773
Length = 830
Score = 673 bits (348), Expect = 0.0
Identities = 391/414 (94%), Gaps = 15/414 (3%)
Strand = Plus / Minus
Query: 12 ggaattcatgagaaacattccatctatccaatatcccaagttgtacaaatattaaaagtt 71
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 ggaattcatgagaaacattccatctatccaaaatcccaagttgtacaaatattaaaagtc 440
Query: 72 ccccc----cacacacaagatgcaacacatggatataacgacaaaaagtagaacactgcg 127
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccccccacacacacacaagatgcaacacatggatataacgacaaaaagtagaacactgcg 380
Query: 128 taatagcaattgcatcattctgctccactttgttggatctttctcaagaagctgtgctgg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taatagcaattgcatcattctgctccactttgttggatctttctcaagaagctgtgctgg 320
Query: 188 ctttatgactttccctgctcccattatctggctatgccagataccagtttttccaagtga 247
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctttatgactttccctgttcccattatctggctatgccagataccagtttttccaagtga 260
Query: 248 aatgtagctataaaagttacttggctaagtaattaataactggataagcaatttataagt 307
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 259 aatgtagctataaaagttacttggctaagtaattaataactgg-----------ataagt 211
Query: 308 ggttatcccagtgaaataaaacacttgatttctaagaaccacttattcataaaaaagaga 367
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 210 ggttatcccagagaaataaaacacttgatttctaagagccacttattcataaaaaagaga 151
Query: 368 tttttttttttatgtccttactatttgttaagacatattcacagaattatgttt 421
| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tgttaatttttatgtccttactatttgttaagacatattcacagaattatgttt 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 830
Length adjustment: 9
Effective length of query: 417
Effective length of database: 821
Effective search space: 342357
Effective search space used: 342357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_p11.g1 MSMg01no305_p11.g1 CHROMAT_FILE:
MSMg01no305_p11.g1 PHD_FILE: MSMg01no305_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:33 2005
(385 letters)
>mm_chr4_28862620_28863404
Length = 785
Score = 665 bits (344), Expect = 0.0
Identities = 374/384 (97%)
Strand = Plus / Plus
Query: 1 tctcattgtttattgacacatcctgtccaaacagctccctcgcaagtgagtggagtcatg 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcattgtttattgacacatcttgtccaaacagctccctcgcaagtgagtggagtcatg 260
Query: 61 aaggagcgagtactgcagcggagtgtgcagctttcctggcaggagccggagcatcccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggagcgagtactgcagcggagtgtgcagctttcctggcaggagccggagcatcccaat 320
Query: 121 ggagtcatcaccgaatatgaaatcaagtattatgagaaagtaagtgtgagagagctgtgg 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagtcatcacggaatatgaaatcaagtattatgagaaagtaagtgtgagagagctgtgg 380
Query: 181 cgccaacagtgcggtgcctgacaccatccaactgcgctgcatgcagtcctgggcattcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgccaacagtgcggtgcctgacaccatccaactgcgctgcatgcagtcctgggcattcca 440
Query: 241 ctacaatttggagctacatcaggatccatacttactattaatagccatcaccaccacctc 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacaattcggagctacatcaggatccatacttactattaatagccatcaccaccacctc 500
Query: 301 tggtttaggattgcgaccaacagctctattttttttctttctgtgtcacacaagtgagaa 360
||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 501 tggtttaggattgtgaccaacagctctattggttagctttctgtgtcacacaaatgagaa 560
Query: 361 tattgtactcgtagaggatttctt 384
|||||||||||||| |||||||||
Sbjct: 561 tattgtactcgtagtggatttctt 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
