Query= MSMg01no306_c22.b1 MSMg01no306_c22.b1 CHROMAT_FILE:
MSMg01no306_c22.b1 PHD_FILE: MSMg01no306_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:53 2005
(278 letters)
>mm_chr4_84063100_84063777
Length = 678
Score = 487 bits (252), Expect = e-142
Identities = 269/275 (97%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 5 gaattcagaactaaactgcagatggcatgaggaagtagagacattggtttgggcatgcac 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcagaactaaactgtagatggcatgaggaagtagagacattggtttgggcatgcac 419
Query: 65 agatttctctttc-agcaacccatggtggggggttagtaggagtaattacttttaatgtg 123
||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 418 agatttctctttcaagaaacccatagtggggggttagtaggagtaattacttttaatgtg 359
Query: 124 ttgcgagttaaaatgtttgtgattgctgttcctggagctcagggcaagaggtacaaggca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgcgagttaaaatgtttgtgattgctgttcctggagctcagggcaagaggtacaaggca 299
Query: 184 ggttggaagggtagggtagctccttctactccttgagtgcctaggggatgaggtacaagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggttggaagggtagggtagctccttctactccttgagtgcctaggggatgaggtacaagt 239
Query: 244 tgggtaagcggggcctacagatggntctgcattgg 278
| |||||||||||||||||||||| ||||||||||
Sbjct: 238 t-ggtaagcggggcctacagatgggtctgcattgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no306_c22.g1 MSMg01no306_c22.g1 CHROMAT_FILE:
MSMg01no306_c22.g1 PHD_FILE: MSMg01no306_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:53 2005
(186 letters)
>mm_chr4_83896889_83897477
Length = 589
Score = 335 bits (173), Expect = 1e-96
Identities = 185/189 (97%), Gaps = 3/189 (1%)
Strand = Plus / Plus
Query: 1 ataggagacagaagaaactgggctcaggagttgcacacaagagaagaaagcagaagacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataggagacagaagaaactgggctcaggagttgcacacaagagaagaaagcagaagacct 260
Query: 61 ccatccaagtctgacatagagcattgagaataataacaagcaagatccatgccctgtgag 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatccaagtctgacatagagcattcagaataataacaagcaagatccatgccctgtgag 320
Query: 121 ccgtgtgcattatcttcatacctaacgggaggaccagtattg-cttccttccaaa-tg-a 177
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct: 321 ccgtgtgcattatcttcatacctaacgggaggaccagtattggcttccttccaaaatgga 380
Query: 178 tcagctatg 186
|||||||||
Sbjct: 381 tcagctatg 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 589
Length adjustment: 8
Effective length of query: 178
Effective length of database: 581
Effective search space: 103418
Effective search space used: 103418
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
