BAC Information

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BAC

Clone NameMSMg01-306F12
Chromosome4 (Build37)
Map Location 112,567,295 - 112,567,472
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
Downstream geneLOC433745, LOC545668, LOC230622, LOC100040607, LOC242627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306F12.T7 (MSMg01no306_f12.b1)MSMg01-306F12.TJ (MSMg01no306_f12.g1)
ACCAG431038AG431039
length764753
length of high quality
(start - end)		444 (65 - 508)675 (77 - 751)
definitionCHROMAT_FILE: MSMg01no306_f12.b1 PHD_FILE: MSMg01no306_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:06 2005CHROMAT_FILE: MSMg01no306_f12.g1 PHD_FILE: MSMg01no306_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTCTATCCTTCAAAGTTCCTCTGTGCAAAAAGGTATCATCACTGAA
TATATCAAAAGAGAAATTAAACTTTTGGTCACTGAAAAACTAGAGATACA
GTGTAATGGTATGAGTGAATTTCCCAGCTCCTATTATAAACCTTGCTCTA
GGGCAAAACTACTCTAGGAGAAACAACAGAAATATTTGGAAATAAAACTA
TTGGATGGGTCACACGGCCCCTAATGGAGGAGCTAGAGAAATTACCCAAG
GAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAACTAAC
CATTACCCGGGAGCTCTTGTCTTTAGCTGCATATGTATCAAAAGATGGCC
TAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAACTTTATA
TGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTA
GGGGATTGGGGNNNNCNNNNNNNNNNNNTNCNNTNNNCCCNNTTTNTTTT
CCCCTTCCCCTCCTCCCCTTCTNTCTTTTTTCCTCTTCTCCCCCTCTTCT
TTTTCTCCCCCTTCTTTGTCTTCTTTCCCCCCTTTCCCCCTTTCCCCCCC
CCTCCTTTTTTGCCTCTCTTAATGAATTCTTTTACCCCCCCCCCTCCTAA
TCTTCCCCTTTCACTTTCTACTCTTCACCCCTCCTTTTTTTTATATACAC
CTTAACGTCTTCTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACTTAAACATACTAA
AAGCAATCTACAGAAAACCAGTAGCCAACATCAAGGTAAATGGAGAGAAG
ATGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC
TCCCTACCTATTCAATATAGTATTTGAAGTCCTAGCCAGAGCAATTCAAC
AACAAAAGGAGATCAAGGGGATAAATTGGAAAGGAAGAAGTCAAAATATC
AGTATTTGCAGATGAAAAGATAGTATGTATAAGTGACCCCAAAAATTCCA
CCAGAGAACTCCTTAACCTGATAAACAGCTTCAGTGCAGTAGCTGGATAT
AAAATTAACTCAAACAAATCAGTGGCCTTTCTTTACACAAAGGATAAACA
GGCTGCGAAAGAAATTAGGGAAATAACACCCTTCACAATACTCACAAATA
ATATAAAATACCTTGGTGTGACTCTAACTGAGGAAGTGAAAGACCTGCAT
GATAAGAAATACAAGTCTCTGAAGAAAAAAATCAAAATAATATACTTTCT
TCTTAGCACTCCATGGTGCATTTTCCAAAATTGGCCATATAATTGGACAC
AAAACAAGCCCCAACTGATAAACAAATATTGAAATTGTCCCAAACATCAT
ATCAGATCACTACAGACTAAGGCTGGTCTTCAATAACAAGAAAGATAAGA
GAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_f12.b1 MSMg01no306_f12.b1 CHROMAT_FILE:
MSMg01no306_f12.b1 PHD_FILE: MSMg01no306_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:06 2005
         (444 letters)



>mm_chr4_112567095_112567936
          Length = 842

 Score =  240 bits (124), Expect = 1e-67
 Identities = 166/180 (92%), Gaps = 2/180 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagttcctctgtgcaaaaaggtatcatcactgaatatatcaaaagagaaattaaactt 60
           |||||||||  |||||||||||||||||||| ||||||||| |||||||||||| ||| |
Sbjct: 378 caaagttccagtgtgcaaaaaggtatcatcattgaatatataaaaagagaaatt-aac-t 321

                                                                       
Query: 61  ttggtcactgaaaaactagagatacagtgtaatggtatgagtgaatttcccagctcctat 120
           ||| |||||||||||||||||||||||||||||||||| |||||||| |||| |||||| 
Sbjct: 320 ttgttcactgaaaaactagagatacagtgtaatggtattagtgaattgcccacctcctac 261

                                                                       
Query: 121 tataaaccttgctctagggcaaaactactctaggagaaacaacagaaatatttggaaata 180
           |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 260 tataaatcttgctctagggcaaaactactctaggagaaacaacagggatatttggaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 842
Length adjustment: 10
Effective length of query: 434
Effective length of database: 832
Effective search space:   361088
Effective search space used:   361088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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