BAC Information

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BAC

Clone NameMSMg01-307C24
Chromosome4 (Build37)
Map Location 24,350,672 - 24,351,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625462, LOC383998, LOC100040464, LOC623873, LOC664973
Downstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307C24.T7 (MSMg01no307_c24.b1)MSMg01-307C24.TJ (MSMg01no307_c24.g1)
ACCAG431629AG431630
length744740
length of high quality
(start - end)
666 (79 - 744)286 (377 - 662)
definitionCHROMAT_FILE: MSMg01no307_c24.b1 PHD_FILE: MSMg01no307_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:10 2005CHROMAT_FILE: MSMg01no307_c24.g1 PHD_FILE: MSMg01no307_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTAAGGGGCTGTATCCCTCAAAATGTTGATTCATAGGAAACCTGAAGTG
AGTGGGTTGATATGTAAAATAAAAGACTAGGCTTCTGATCTGCATAAGAT
GAGCTATCCAGAGAATTTTTTCAAATAGCAAGAGTGTACTGCTTGGAGAA
CTATCTCGAGAAGAACATAGAGAGAACTTTCTAGAGATCTCTAGAGAAAC
CAGATCAGAAAGAAAGAAAGCAGAACAGAGAGAAAGCAAGCAGGAAAGCT
GTTTCGAGTGAAGTATAGACCACCAGCTTCCACCCACAAATTGACTTGGA
GTCACTCCCAGAGATACTTTTCACAAAATCCCTCTCTAAGCCAAGGCTGG
CCCTTGGCATGGTGGTGGTGCCAAGAGTTTGGAGCAGTACTCCTTCTAGA
GGAACAAGTTGGCCAGGAGTGAGTGAGTGAATTTGTTTCCCATTCTTGGG
TACCACAGAGATGTTAGTGGGCTGGGCTACTTTCTAATGGATGCTGGCTA
ACCTGAGTTCTTCCAGGCTGAAGATCCTGTGTGCTTAGACTTTGGTGTGG
TATCTCACAGAAGGGCATCTACAATATGGGTCTGATGGGACTGGATACTT
GGCCAGGCACAATGTGGCACACTTTTGCATGCTGAGCCATGAGTCTATGG
ATATTACATGCTAGCTGGTTATACCAAGAGTCCACTCTCTGCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXGCGAAAAAACAAGAAGGTGGACTCCAGAAAATCAAATA
ACCCCATTAAAAATGGGGCTCAGATCTAAACAAAGAATTCTCACCTGAGG
AATACCCAATGGCAGAGAAGCACCTGAAAACATGTTCAGCATCCTTAATC
ATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGT
CAGAATAGCTAAGATCAAAACTTCAGGTGGCAGCAGATGCTGATGAGGAT
GTGGAGAAAGAGGAACACTCCTCCTANGTTGGTGGAATTGCAGGCTTGTA
CAACCACTCTGGAAATCAGTCTGCCGGTTCCTCAGAAAATTGGACATAGT
ACTACCGGAGGATCCAGCCACACCACTCCTGGGCATATATCCAGAAGATG
CCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTA
TTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCCACAGAGGA
ATGGATACAGAAAAAGTGGTACATCTACGCAATGGAGTACTACTCAGCTA
TTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAG
GGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATAT
GTACTCACTGATAAGTGGATATTAGCCCCAATCCTAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_c24.b1 MSMg01no307_c24.b1 CHROMAT_FILE:
MSMg01no307_c24.b1 PHD_FILE: MSMg01no307_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:10 2005
         (666 letters)



>mm_chr4_24350141_24351206
          Length = 1066

 Score = 1011 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Minus

                                                                        
Query: 132  gaagaacatagagagaactttctagagatctctagagaaaccagatcagaaagaaagaaa 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gaagaacatagagagaactttctagagatctctagagaaaccagatcagaaagaaagaaa 1007

                                                                        
Query: 192  gcagaacagagagaaagcaagcaggaaagctgtttcgagtgaagtatagaccaccagctt 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gcagaacagagagaaagcaagcaggaaagctgtttcgagtgaagtatagaccaccagctt 947

                                                                        
Query: 252  ccacccacaaattgacttggagtcactcccagagatacttttcacaaaatccctctctaa 311
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 946  ccacccacaaattgacttggagtcactcccagagatacttttcccaaaatccctctctaa 887

                                                                        
Query: 312  gccaaggctggcccttggcatggtggtggtgccaagagtttggagcagtactccttctag 371
            |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 886  gccaaggctggcccttggcatggtggtggtgggaagagtttggagcagtactccttctag 827

                                                                        
Query: 372  aggaacaagttggccaggagtgagtgagtgaatttgtttcccattcttgggtaccacaga 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  aggaacaagttggccaggagtgagtgagtgaatttgtttcccattcttgggtaccacaga 767

                                                                        
Query: 432  gatgttagtgggctgggctactttctaatggatgctggctaacctgagttcttccaggct 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  gatgttagtgggctgggctactttctaatggatgctggctaacctgagttcttccaggct 707

                                                                        
Query: 492  gaagatcctgtgtgcttagactttggtgtggtatctcacagaagggcatctacaatatgg 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  gaagatcctgtgtgcttagactttggtgtggtatctcacagaagggcatctacaatatgg 647

                                                                        
Query: 552  gtctgatgggactggatacttggccaggcacaatgtggcacacttttgcatgctgagcca 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  gtctgatgggactggatacttggccaggcacaatgtggcacacttttgcatgctgagcca 587

                                                                   
Query: 612  tgagtctatggatattacatgctagctggttataccaagagtccactctctgctt 666
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  tgagtctatggatattacatgctagctggttataccaagagtccactctctgctt 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)