Query= MSMg01no307_k05.b1 MSMg01no307_k05.b1 CHROMAT_FILE:
MSMg01no307_k05.b1 PHD_FILE: MSMg01no307_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:45 2005
(372 letters)
>mm_chr4_100052484_100053254
Length = 771
Score = 652 bits (337), Expect = 0.0
Identities = 358/365 (98%), Gaps = 1/365 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatctcatgtcaccctctatgtggcaccttgtatgttccaggttccacagataa 64
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 568 gaattcaatctcatgtttccctctatgtggcaccttgtatgttccaggtttcacagataa 509
Query: 65 agatgaggaaatgtaaactgacttgctctgggctgccttctcaaagtctgctccaggcct 124
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 508 agatgaggaaatgtaaactgacttgccctaggctgccttctcaaagtctgctccaggcct 449
Query: 125 taccacagcatctttgtgggcaaaggactgtgcgtcaagcattccagcccatgaactgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 taccacagcatctttgtgggcaaaggactgtgcgtcaagcattccagcccatgaactgta 389
Query: 185 tcgaaggctttgtgatggaccagaaaccctgctccctatttaagcacctataccccaaag 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 388 tcgaaggctttgtgatggaccagaaa-cctgctccctatttaagcacctataccccaaag 330
Query: 245 tactcttgggagttatagggagatcatcaaatttgcctctgaatcagtttagatacagga 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 329 tactcttgggagttatagggagatcatcaaatttgcctctgaatcagtttagatgcagga 270
Query: 305 ataggaacctaggaacaccaagtttgctcgtgggttgacggcaagtcaatttgcttgcgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ataggaacctaggaacaccaagtttgctcgtgggttgacggcaagtcaatttgcttgcgt 210
Query: 365 tagac 369
|||||
Sbjct: 209 tagac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 771
Length adjustment: 9
Effective length of query: 363
Effective length of database: 762
Effective search space: 276606
Effective search space used: 276606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_k05.g1 MSMg01no307_k05.g1 CHROMAT_FILE:
MSMg01no307_k05.g1 PHD_FILE: MSMg01no307_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:45 2005
(573 letters)
>mm_chr4_99895922_99896893
Length = 972
Score = 1048 bits (542), Expect = 0.0
Identities = 565/576 (98%), Gaps = 7/576 (1%)
Strand = Plus / Plus
Query: 1 cttgggatgaacctcatttgaggcccaaatctgcaccctgctgtggactgttcttccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgggatgaacctcatttgaggcccaaatctgcaccctgctgtggactgttcttccttc 260
Query: 61 attccaacaagggaagcttatggtatgcttgcagattgacccctgtcagaggtcaggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccaacaagggaagcttatggtatgcttgcagattgacccctgtcagaggtcaggctc 320
Query: 121 ataaaagtcagagggggaggtttggaaatttgacccagctggggcatcccagataaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaagtcagagggggaggtttggaaatttgacccagctggggcatcccagataaaaag 380
Query: 181 ggttgattttaaaggactgttacagtttataccagcagacacaccaacagatagacaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttgattttaaaggactgttacagtttataccagcagacacaccaacagatagacaata 440
Query: 241 cttcctgtctcagagattggtcagggggtggggtgtacgcagatagactgacacttttgc 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 cttcctgtctcagagattggtcagggggtggggtgtacgcagatagacagacacttttgc 500
Query: 301 tttttgccaaccccacccctgctgcctggtctgtttactccccccccc---gtttaggga 357
|||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 501 tttttgccaaccccacccctgctgcctggtctgtttactctctc----tttgtttaggga 556
Query: 358 catgcttccttcctttgtctgtctataagcactgaaccttggacatctatattcttcaat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catgcttccttcctttgtctgtctataagcactgaaccttggacatctatattcttcaat 616
Query: 418 agctgagacaaaggcagagttgctccccttgggaaataaagcagactgggcaatagattc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agctgagacaaaggcagagttgctccccttgggaaataaagcagactgggcaatagattc 676
Query: 478 acttgtgtgagcaaatagactggggcgagctccattcatccttaaaaccctctccaaagt 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acttgtgtgagcaaatagactggggcgagctccattcatccttaaaaccctctccaaagc 736
Query: 538 ccacctcctctaggaagcctgcctggacttcctgca 573
||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccacctcctctaggaagcctgcctggacttcctgca 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space: 541606
Effective search space used: 541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
