TTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAAGACTTCCCGTGCTTCACAGAGAAACCCTGCCTTAATATA
AAGTCCCAAAACCAACAACTTAAACCTTTACAAAAAAAAAAAAAAAAACC
AGAGAAAGGAATAAGCTTAACAATTAAATTATGACTGATTATGACTAATA
GTGTGAAACAATAACATTTTATAATTTTCAAAAAGGTTAATTTTAATGAC
AGCTCTTGAAGCATTTATAATTTGATGGAAATGGCAAATCAAGAGGTTAT
ATCAAAATGGGGGAACCCCACCGCACATTTTTGAAGTCCCTGAATAAATA
ACCATCCTTCCCCAGTATTCTCCAATTCTTAAACAAAGGTCCCATTCACG
GCTTCTGCCTTGCCTGTGGTCTACAGGTACAGAATACACAGAAGTTGATA
TATACAGATCTTAGTCCACTGGCAATAAACTGGAGAGCCATTCCATTAGC
TTCAAATCCATGTATCAGAGGAGATTTTACCCACTGCTTTTAGACATCAA
TTCTGAAGATGTTTTGTACTAAATTTTCTTTTATTCTATAGTTCATTTAT
TGTTAGTGAGACTTACAGTGGCTAATCATTTTCAATTAATCACCACCCTA
CTTAGTGAGGATAATATTTCTCTTTAAGCTATAATTGGCTCCTACCACAT
CCTGAAGTGGGCAATTCTTTCTAAGTAGCATCAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTTACAATTTGTATCCCCTT
GATCTCCTTTTGTTGTCGAATTGCTCTGGCTAGGACTTCAAGTACAATGT
TGAATAGGTAGGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGT
GGGATTGCTTCCAGCTTCTCACCATTTACTTTGATGTTGGCTACTGGTTT
GCTGTGGATTGCTTTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATC
TTTCCAAGATATTTATCATGAATGGGTATAGGATTTATCAAATGCTTTCT
CCGCATCCTTTTTTATGATCCTCCCCCCCCCCGCCTTTGAGTTTGTTTAT
ATACTGGATTACATTGATGGATTTCTGAATATTGAACCATCCCTGCATCC
CTGGGATAAAACCTACTTGGTCAGGATGGATGATTGTTTTGATGTGTTCT
TGGATTCGGTTAGCTAGAACTTTATTGAGTATTTTTGCATCTATATTCAC
AAGGCAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGTTT
TAGATATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGTAGAGTACCT
TCTATTTCTATTTTGTGGAATAGCTTGTGCAGAACTGGAATTAGATCTTC
TTTGAAGGTCTGATATAACTCTGCACTAA

Query= MSMg01no307_l17.b1 MSMg01no307_l17.b1 CHROMAT_FILE:
MSMg01no307_l17.b1 PHD_FILE: MSMg01no307_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:52 2005
         (606 letters)



>mm_chr4_30907853_30908858
          Length = 1006

 Score = 1081 bits (559), Expect = 0.0
 Identities = 583/591 (98%), Gaps = 2/591 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  aaaaccagagaaaggaataagcttaacaattaaattatgactgattatgactaatagtgt 76
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aaaa-cagagaaaggaataagcttaacaattaaattatgactgattatgactaatagtgt 748

                                                                       
Query: 77  gaaacaataacattttataattttcaaaaaggttaattttaatgacagctcttgaagcat 136
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaaacaataacattttataatattcaaaaaggttaattttaatgacagctcttgaagcat 688

                                                                       
Query: 137 ttataatttgatggaaatggcaaatcaagaggttatatcaaaatgggggaaccccaccgc 196
           ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 687 ttagaatttgatggaaatggcaaatcaagaggttatgtcaaaatgggggaaccccaccgc 628

                                                                       
Query: 197 acatttttgaagtccctgaataaataaccatccttccccagtattctccaattcttaaac 256
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acattgttgaagtccctgaataaataaccatccttccccagtattctccaattcttaaac 568

                                                                       
Query: 257 aaaggtcccattcacggcttctgccttgcctgtggtctacaggtacagaatacacagaag 316
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 567 aaaggtcccattcacgggttctgccttgcctgtggtctacaggtacagaatatacagaag 508

                                                                       
Query: 317 ttgatatatacagatcttagtccactggcaataaactggagagccattccattagcttca 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttgatatatacagatcttagtccactggcaataaactggagagccattccattagcttca 448

                                                                       
Query: 377 aatccatgtatcagaggaga-ttttacccactgcttttagacatcaattctgaagatgtt 435
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatccatgtatcagaggagatttttacccactgcttttagacatcaattctgaagatgtt 388

                                                                       
Query: 436 ttgtactaaattttcttttattctatagttcatttattgttagtgagacttacagtggct 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgtactaaattttcttttattctatagttcatttattgttagtgagacttacagtggct 328

                                                                       
Query: 496 aatcattttcaattaatcaccaccctacttagtgaggataatatttctctttaagctata 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatcattttcaattaatcaccaccctacttagtgaggataatatttctctttaagctata 268

                                                              
Query: 556 attggctcctaccacatcctgaagtgggcaattctttctaagtagcatcat 606
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attggctcctaccacatcctgaagtgggcaattctttctaagtagcatcat 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)